Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016441_circ_g.2 |
ID in PlantcircBase | zma_circ_008693 |
Alias | zma_circ_0001903 |
Organism | Zea mays |
Position | chr5: 162431900-162432118 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d016441 |
Parent gene annotation |
Tyrosine aminotransferase |
Parent gene strand | + |
Alternative splicing | Zm00001d016441_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d016441_T005:1 Zm00001d016441_T008:1 Zm00001d016441_T003:1 Zm00001d016441_T007:1 Zm00001d016441_T006:1 Zm00001d016441_T001:1 Zm00001d016441_T002:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.186115931 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
162431991-162432115(+) 162432029-162431902(-) |
Potential amino acid sequence |
MGVFGHIAPVLTIGSLSKRWIVPGWRLGWVAVCDPNKVLQETKVAEVARKLGILVIADEVYGNL VFGDTPFVPMGVFGHIAPVLTIGSLSKRWIVPGWRLGWVAVCDPNKVLQETKVAEVARKLGILV IADEVYGNLVFGDTPFVPMGVFGHIAPVLTIGSLSKRWIVPGWRLGWVAVCDPNKVLQETKVAE VARKLGILVIADEVYGNLVFGDTPFVPMGVFGHIAPVLTIGSLSKRWIVPGWRLGWVAVCDPNK VLQETK(+) MVNTGAMWPKTPMGTKGVSPNTRFPYTSSAMTSIPSFLATSATLVSCRTLLGSHTATQPSRHPG TIHLLDSDPMVNTGAMWPKTPMGTKGVSPNTRFPYTSSAMTSIPSFLATSATLVSCRTLLGSHT ATQPSRHPGTIHLLDSDPMVNTGAMWPKTPMGTKGVSPNTRFPYTSSAMTSIPSFLATSATLVS CRTLLGSHTATQPSRHPGTIHLLDSDPMVNTGAMWPKTPMGTKGVSPNTRFPYTSSAMTSIPSF LATSA(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |