Detail information of 2_circ_ag.5


General Information
CircRNA Name 2_circ_ag.5
ID in PlantcircBase ath_circ_012752
Alias 2:1353002-1357886
Organism Arabidpsis thaliana
Position chr2: 1353002-1357886  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 2_circ_ag.2 2_circ_ag.3 2_circ_ag.4 AT2G04080_circ_g.1
Support reads 2
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGAAAGCTGACTCTACAAGCCAGAGACAAAGCCCTGCCAATACGGAAACCCTAGCAACTTGA
GGATTTCCAGCTCCCAATTTGTTTGACACTCGTGTGctgttccttccagttcatggaggctgtg
acgatagccagtaaagtggcttgcaccgcggatccaaccataacaccgcaccagagtccttttc
cattccac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTTCCTTCCAGTTCATGGAGGCTGTGACGATAGCCAGTAAAGTGGCTTGCACCGCGGATCCA
ACCATAACACCGCACCAGAGTCCTTTTCCATTCCACTCACGACTGAAAGCTAAGTAAACTCCAA
CAGGAGCTCCTACAAGATAATAAGCCACCACGTTGATCAAAGCTCCAATGTGTTGCCACCCACA
TCCCCTAGCCACTCCATTTAGAACTGCCGTTAATCCGTCGAGGATGAAGGAGAGACAGAGCAAA
GGAGATATGTCAGCAACATAGTCAACAACTTCTTTGCTGTTGCTGAATGTGTAGCCTATGATGT
TTCGGCAGGTGAAGAGAAGTGTGCTAAAGAAAGCTGTTACATAGCGATTCTACTATGGACAATT
CCTTCCGACCTTTATTAGATCCACGACAGACGACACCTCCTTCTTCTTCTCTATGCGCTTGATG
GATACCTTCAATATCTTCTCTACATAGAATCCTGGCGAACGGCTATAATTGTGCACACTTGCCT
CCATTAATCTACAAATCTGTTTATAAATCGCAGTAGCTGAGACTCGAAGCCTACACCTCTTAAT
GTAGAAGCATTAATGAACATTTTATCAACCATTGGACCAAAGGTACTTCCACCAAATTATTCCC
ATTTAGTATATGAAAAAGTAAAGAAAACAAAGAAATTTATCTCTCTCTCGTAAAGGATTAAGAA
ATAGATAACCGTGCTTTAGCAAAAAAAAAAATGTGCAAAATTATTTGTTCTAATTAAAAAAACA
ATTTCTACATAAGCAAATTTTAAGTATTGATAAAACAGGGATTTATACAAAAAATTATAACACA
CCGACTATGCTGTAAGAAATTTTTGCAGCTTTATTTTGACAGTATATAGCCGTAAAACAATTGA
GCAATGAGAGTTACAAATAGTTTGAGATAGCTCTCAGAAACACCATTCTTTAAGCCAATCCATT
TTCACTTGAGATTAGTCTCTTCCTTGCCTTCTTGGCCTGCAAATCATAGATTCCAGTTACTTTA
GAGAATTAAAAAAAAAAAAGAATGTATTGTAATAAGCTCTAACCTGTTCCTTCCAATTCATGGA
AGCCGTGACAATAGCCAGTATAATGGCTTGCACAGCGGATCCAACCACTACACCACACCATAGT
CCTTTTCCGTTCAACTCACAACTGAAAGCTAAATATATTCCAACCGGAGCTCCTACGAGATAAT
AAGCTACTACGTTGTTCAAAGCTCCAATGTGTTGCCAACCACATCCCCTGGCAACCCCATTAAG
AACTGCGGTAAATCCGTCAAGAACAAAGGAGAGACAGAGCAAAGGAGATAGATCAGCCACATAG
TCCACAACTTCTTTACTGTTGCTGAATGCGTAGCCTATGATGTTCCTGAAGGCGAAGAGAAGTA
TGCTAAAGAAAGATGACTCTACAAGCCAGAGACAAAGCCCTGCCAATACTGAAACCCTAGCAAC
TTGAGGAATCCCAGCTCCCAATTTGTTTGACACGCGTGTGCTGCAAGAAACCAAATGACTTATA
TTGTTTAGGAAGAAGATGTTGAATATGGTTGGTTAAAAATTAGAGTTCATACCTCACAGCGGCC
GCGACTCCAACTGGAATCACATAGTGCAAAGTTGCTGTTGTAAGACTTGCATGAAAGAAATAGG
ATTCGTTAGCTTTTTTAGTATAGATCGCACTAGTAAAGATAAAAAGAAGTCCTTCTATATGAAA
CTTACCAAATTGAAAGAACAGAGGTCTCGAGTTTTGGGTTTTGGAGAAGACCTGAACAGAGTAT
AAGTAGCTCAAATAGCCACCATTCTAGGCTGTAAAAGGCAGACCGAGAAAATGCAAGTGAGATA
AGAAGAAGCATTGGCGTATGTAACTTGACCAACAAGAAACTTTTAATAGACTTACCAAAGCATT
GCCGCTGATGGGACTCCATAACGGAAGAACTGCTTGACAGAAGACAAGAAATCTTGGGATACAA
ATCGGCGAGTCTTCTCGCAAGAGCTGGAGAATCTCACATAACATGAGAGTGTCATAGCGAAAAA
CCAGAAAGACACACTAATAGCCAAGGCAGCTCCATTGCTTCCCAAACCAAGTGCGGAAACCAAA
GTCCAGCAAACCGCAATGTGGAACAAAAGGGTGGTCAGGGCAAAGTAAAGCAGTGGAAGAACCA
ACCCTTGTGCTAGCAGAAACCGGGTCAGTGGTAAGACAATCGCATGGGCAAACAAAGTCGGTAT
GAGCCGCAAGGCGTAGGAGCCAGCGACTCTGGAGATGTCAGGGTCTTGTCCGAGAGAGATCAAG
AGTTTTTCCATGTATATCCAGAGAATTGATATGAGGACACATATAGGGATGTTAGAGGAAATTG
CGGAGTATGTATAGGTTCCCATTTTTTCGTATTGTTTGGCTCCATAAGCTTGGCCAGAAAGAGT
TTCTAGTGAACCCACTAACCCAAACTGCACAAAGAATTGAAGTATTTATCAAGATTTCAGAGTC
AACTTGATTTTGAACATAAGAGGAGAGAGTAGTCATAACATAATTACCATAATGCTGAAACCGG
AGACATTTGTGAAGGAGGTAGCAAGAGCGACACCGGAGAGCTGGAGCTCGCCGTTGTGGCCAGC
GACCATGACTGAGATGACTGGCAATAAGTACTGTGCAATGGTCACGGTGGCCATAGGAACAGCC
AAGCGGCTCACTTTCTTCAGCTCGACATTGAGCTGACCACTTTTCCATGTGGCTTTACAGGGGA
CTATCTGCTCATCTTGCGGAAGAAATGGCTCTTCCATTGTTTTAGGTTGTTAATTTTTTTTTTG
TCCTTATTTTTTGTTTGTTATTGTTTTGTGTTGAAAGCCTTGTCTAGTACTTTAATTGTCTATA
ATTTATGCGGACATTCTTCCATCTTTTATAGACACTAGACAGACGACGAAACCAATGTCAATGT
CAACGTAGACTTTTCTTTTTTGGAAATTGTGGGAATAGAATATTCAAATTACATGACTCTTAGC
TCGACCAGTGGAATTCTATATTTTCCACGAAGATCCTCAAAAAGTATATTATAAAAGTCTACAT
GATAAAGTATAAAGTATTACTAAAGTTTATACATCAAAGTTTTCAGCAATGACGTTGTATAGTT
TCTCTTAATAAGTTTCCGGAAAACAATAGTTTTTTTTAAGGTGAACATACATCATGTTTTTTAT
TGTTAAAGGAACATACATCATGTTTTTTGCAAATGACAAAATCTTCTAACAACTTCACAAGTTA
TAACAGTTTTATAAAACTGTTATAAAAGTCATGTATATTAAACTTTTTATTACTTCCATAAAAG
TCAGATATCACAATAACCTAATAACAAAGACAAACAAAAGAGACAATTCGGTCATTTTGAAATA
CAAATGGTGGACGTCGTCGTCAACACTCAACAGTCGTCCAATATCAGCATTTTGGAAATACATG
ATAATACACTTGGGGATCACGTTCCAATGATCTATGACTAAACAACAAAGGCAACTCGAATAAT
TACTTGGGAATCAAGTTCTAATCATATCATAGATTAAACAAAAGATAATGACATTGTTACAAAA
AAAAAAGAGACAGTTTGTTTTAACAGTTTATATTAAAAAGGAAAAATGTCTTAATTAACAAAAA
CATTTTTTTGGTTTAAATAACAACTAGACAGTTCAAACGTGCAGCTGAGGCTGATAAAAAGGTA
GGAATTCGTATTAAGTTTTCACCACTAAACCTACTAATTAAATGACATAACATTAGTGGACTAT
GTGGAATTTGAATCTTCTATAAGTATTTTTCATCTATATATTTTTAATGATTTACGTCAAGAAA
CATGTATGTGAAAACTCTTATGGATCATTAGTGTAAAGTTATTATGTTTGGACCATATATAAGA
GAGATTATTTTCTTTTGTGAATTTTAAAGTTAATACTAAGTGTTAAATCTGGTTGTGCCATACA
GGCCATTTTTAGTGGACTTATTGGGATAATGGATAGGACTCACATAGTTGTTTTTTATAAAGAT
AGGACTGATTGCAGCTGAGGCCATTTTTAATCCCATGGTGTTTGGAACTAATGAGTTTTTATTT
ACTTGTTACATTTGTATATTAAAGTTTGAAGAAAATAAATAAATCATCTTTCAGCATGTGCAAT
TCGAATAATTTTTCTAACTAACGAAAATATCAACTCAAGAAAAAATGTATAAATCCTGGATAAA
AGTTTTACAAAAAAATATTATAACCCATCAAAATAACATTACATGTTTTTTTGCACATGACTTG
CAAATACTTTGAGATAGCTCTTAGGAACAACCTTTATTTAAACCAATCCATTTTCAGTAGAGAT
TATTCTCTTCCTTGCTTTCTCAGCCTGCAAATAATAGAGTCCAGTTACTTCAGAGCATTCAAAA
AACTAGAATGTAACAAACTCTAACCTGTTCCTTCCAGTTCATGGAGGCTGTGACGATAGCCAGT
AAAGTGGCTTGCACCGCGGATCCAACCATAACACCGCACCAGAGTCCTTTTCCATTCCACTCAC
GACTGAAAGCTAAGTAAACTCCAACAGGAGCTCCTACAAGATAATAAGCCACCACGTTGATCAA
AGCTCCAATGTGTTGCCACCCACATCCCCTAGCCACTCCATTTAGAACTGCCGTTAATCCGTCG
AGGATGAAGGAGAGACAGAGCAAAGGAGATATGTCAGCAACATAGTCAACAACTTCTTTGCTGT
TGCTGAATGTGTAGCCTATGATGTTTCGGCAGGTGAAGAGAAGTGTGCTAAAGAAAGCTGACTC
TACAAGCCAGAGACAAAGCCCTGCCAATACGGAAACCCTAGCAACTTGAGGATTTCCAGCTCCC
AATTTGTTTGACACTCGTGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.347071665
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020