Plant Circular RNA Database

Detail information of Os11g0102900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os11g0102900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_008227
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 117889-121497  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0102900						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os11t0102900-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0102900-01:6

General Information
CircRNA Name	Os11g0102900_circ_g.1
ID in PlantcircBase	osa_circ_008227
Alias	NA
Organism	Oryza sativa
Position	chr11: 117889-121497 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0102900
Parent gene annotation	Similar to predicted protein. (Os11t0102900-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0102900-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AACAAGAATCAAAATGGCCCCAACCACAGCACATACAATAATTACTATAGTGCGGCCAGTGTTA
CTGTGTCCCATGCGAAGGTCACTGTTTCCTGAGAAGccattcaacaatgttacggcagtggagc
ccaaagttgtcatttgagattggctcatggcctgagattagctcaagtaaaatgacaccaaaac
tgtacata

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCATTCAACAATGTTACGGCAGTGGAGCCCAAAGTTGTCATTTGAGATTGGCTCATGGCCTGAG
ATTAGCTCAAGTAAAATGACACCAAAACTGTACATATCACTCTTCTCTGTTAGCTGCTGCGAGA
TATAGTACCTACGAGCACACGCAAAAAGGGTGAGCTTGGGGAACACTTGGCATCAGATGTTACA
AAGGTATATAGCAATTCAATTTGCAAGGCCATTGATAACAAGAATAGACTTCATAAATTTCAGG
AAAGACATGGCCTTACTCTGGGTCCAGATATCCAACTGTTCCTCTAACTATACTTGATACATGA
GACCCGTCGACAACAGGTTTTGACAAGCCAAAGTCTGCAACTTTTGCTCTCATGTTCTTGTCAA
GGAGAATGTTACTGCTCTTGAGGTCTCTGTGGATGATAGTTGGGGAGCATCCTGTGTGGAGATA
CTCTATTCCTGATATTTTATTTTTTTTTCATGGAAATGAAAGACTTCAGAATCTTTGAAATGCA
TGTTGGTAGAATAATCACAGGAAAATTGTACACGAGGAAGGGAGGGAGATAAACCTTTTGCAGC
ATCTTCTGCTATCTCAAGACGCTTGACCCAGCTAGTTATTTTTACATCATCAGGGCCTCCTGTC
AAAGTATGATAAAGTTCATGTCAATCCTGAGCCTCAGTGTCAAAGAATCATGCACGAGCTAGAC
AAGTAGACAAAGCCGCAGCTGAGCCTTGATTTATGTGTAGCATGGAAACTTCTCAAATCTTGAC
AGTTTGTATTCAGTTTTTAGTTAAGACTGGAAAGAAGTAAACATCAGAACAGAAAAGAAAAGGC
TTATACATCAGTGAAGATCCTATAAGTTTTTCGGAACACGAATCCTTATCCAAAACTGGAAAAA
GAAAACTCAAGCATGAATTTGCTGTATTATCTAGGGAAATATCAGGTGAAAAGTACCAATCCGA
TAAAATCGTGGAAACCACTGCACAAACTATGCATATGACTTCAAAAAATTTCTCAAAATAATTA
CTGTATGAGGGGAGGAGATAATGAGATACCATACGAAATCATGGAGACCCTAATATTCTAAAAT
ATAACTACACATGGAACATTTACTTGTAGAAGAATCATTCTCTACACAACGACAATTTGGTGTT
GATTCTGCAAACTAGATTTATCATCAGATGGTAGGACCATAGGAACTTACCACGGAGGTGCTCT
TTTAACGTCCCGTTATGCATGAATTCATACACAAGTATATTTTTACCATCTTGCTGGCTGTAAC
CAAGGAAGCTCACCAGGTTTCTATGATGAATTCTTGAAAGCAATGTTACCTGAAACATAAGTCC
GTCAGATACTATACTACATAGAGGGTGAGGGTCCATAGGATGTTCCAAATAGAAAATGTTCATA
TCTTATACTACTTAAAATAAATTGAGGTTATAAAGTATATGTAACGCAACATGGTCACATCCCA
TTAGTGTAGGTCTATCAATTAAGTAGGAAATGAATGTGTCCCAGAATATACTGGGCTTCAGCTT
CAGCTTCAAGGTTTCAATCTACCAAGCAGTGATAAAATTAGCAATAGGTACGCAAGTTTTATTT
ATATCTTAAACTGTTAAACTGTGAAAAACAGCCCATTTTGGGCCGAACACAAAGCCTTTTTGGG
CCCTGGGTCAACACTCATTAAACTGTGTGCACAAAGGTTAAAATTCATCTGTTTTTGGCTAAAG
GCTACTCATGAGTAATTGGGTCAAAGGCTAATATAGATGCACTTTTGGGCCCAAGGTTGACTCA
CGAAGTTTTGGGCTGAAGGCAAGTTGTAACGCGTGTTTTTGGCCCCAGCTATAATACTTGTGCC
CAAGACTAATACTCATGTGCACTTTGGCCAAAGGCTAATAATATTCATATGTTTTTGGCCCAAA
TTAATACTCACAAAATTTTTGGGTTGAAGGCTATTAATCATTTGTTTTGGGGTCAAAGGTTATA
ATCCATACATTTTTAGCCCCAAGGTTAATAATCATGATTTTTTTGAGCAGAATGCTAACATTCA
TGTGTTTATAGGTCTAAGGTTGAGGTTGAGTTCTTTTCAGCAACTTGAAACAACAACTTCCTCG
GTTTCCGTCAACACGCTTCCCAAACTGCTAAACGATGCGTTTTGTGAAATATATAGAAGTTCTT
TAAAAAAAATCAAATAAATCCATTTATTAAATTTATAATAGTTAATACTCCCTCCATCCTCAAA
TGTAAGACATATTTCTTTTGTCACCAAGACAAAGGAGAAATTAACTCATCTCCCATGTAACAAA
ATCAAGGAACTATATGCATGCAACCAATGAATATTAAGATGGTTGCTTGGGTTCCTGTCAACAA
TTAATTTAGCACATGAAGACTCCAAATATAATCATCTCTTTTAGAAAAACCAAAAAAAAAAAAA
GCCTAACACCTTTGGATGGAGGGAGTACGTAATTAATTATGTGCTAATGATATGCCCCGTTTCC
GAGCTGCGAACCGCTGCAGCCAAACTGCTGGTTCGAACTAGCCCTAAGACTAAAGAAATTATGA
GGCAAAAGCTAATATTCATGTGTTTTTTGACCCAAGGCTAACACTCTTGAAATTTTTAGACGAA
GCCCAAATTCATGCACTTTTGGTCCCAAGGTCAATACTAATGAAATTTTGTGCCCAAGGTTAAT
ACTTGTATGTTTTTTTGGTGGAAAAGTAATACACCTGTGTATTTGGAGTAAAGGCAAATATTCT
TGTGTTTTTTCAGCTCAAGGATGATATTCATGACATTTTGAGTGAAGGTAATATTTATGTGATT
TGGGCTCGAAGGTAATATTCATGTGTTTTTAAGCTGAAGGCTAAACAATCATGCATTTTTGGCC
CAAGCTAACATTCATTTGTTTTTGGGCCCAAGGTTAATACTCATGTGTTTTTGGACCAAAGACT
TAATAGTTGTGTAATTGAGGTGAAGGCTATAGTCAACCATTTTTGGGCCCAAGGTTAATTTTTG
GCCAAACGGGAATAGTCATCCATTTTTAGCCATAGTTTAATAGTCTTCATATTTTAGGCCGAAC
GCTAACACTTACTGTGTATGTGATTTATATTTCAAGAAAATATTATAAGGCAAGAAAAGAAACA
TACCTCATTCAAGAATTCTCGGATGCCTTGATAGGAGTCATTTGTGAGAAGTTTGACTGCGATT
TCTCTCCCATCTGTAAGCTTTCCATAGTATACTATGCCAAACCCTCCCGAACCAATTCTTCTGT
CAAATTTGTCAGTAGCATCTTCAATTTCAGACAATGCAAATCTGTGCGCCGATTCCGTGGCCAC
TTCACTGAAAAATGAGCCTAGCTTTTTTGCTGGTGCCGCAATAACAACAGTTTCTGGAGACACA
AAGTAATTACTACGCGACCATACACCATACCAGATATGCCCAATGAGCTAAAGAATACGCACCG
TCCGATGATTTCTTCTTCCTTTTGCATGTGAACAGGTAACAAACAATAGCAGCAACAAGAATCA
AAATGGCCCCAACCACAGCACATACAATAATTACTATAGTGCGGCCAGTGTTACTGTGTCCCAT
GCGAAGGTCACTGTTTCCTGAGAAG
						
					

			
		

Sequences
Splice junction sequence	AACAAGAATCAAAATGGCCCCAACCACAGCACATACAATAATTACTATAGTGCGGCCAGTGTTA CTGTGTCCCATGCGAAGGTCACTGTTTCCTGAGAAGccattcaacaatgttacggcagtggagc ccaaagttgtcatttgagattggctcatggcctgagattagctcaagtaaaatgacaccaaaac tgtacata
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCATTCAACAATGTTACGGCAGTGGAGCCCAAAGTTGTCATTTGAGATTGGCTCATGGCCTGAG ATTAGCTCAAGTAAAATGACACCAAAACTGTACATATCACTCTTCTCTGTTAGCTGCTGCGAGA TATAGTACCTACGAGCACACGCAAAAAGGGTGAGCTTGGGGAACACTTGGCATCAGATGTTACA AAGGTATATAGCAATTCAATTTGCAAGGCCATTGATAACAAGAATAGACTTCATAAATTTCAGG AAAGACATGGCCTTACTCTGGGTCCAGATATCCAACTGTTCCTCTAACTATACTTGATACATGA GACCCGTCGACAACAGGTTTTGACAAGCCAAAGTCTGCAACTTTTGCTCTCATGTTCTTGTCAA GGAGAATGTTACTGCTCTTGAGGTCTCTGTGGATGATAGTTGGGGAGCATCCTGTGTGGAGATA CTCTATTCCTGATATTTTATTTTTTTTTCATGGAAATGAAAGACTTCAGAATCTTTGAAATGCA TGTTGGTAGAATAATCACAGGAAAATTGTACACGAGGAAGGGAGGGAGATAAACCTTTTGCAGC ATCTTCTGCTATCTCAAGACGCTTGACCCAGCTAGTTATTTTTACATCATCAGGGCCTCCTGTC AAAGTATGATAAAGTTCATGTCAATCCTGAGCCTCAGTGTCAAAGAATCATGCACGAGCTAGAC AAGTAGACAAAGCCGCAGCTGAGCCTTGATTTATGTGTAGCATGGAAACTTCTCAAATCTTGAC AGTTTGTATTCAGTTTTTAGTTAAGACTGGAAAGAAGTAAACATCAGAACAGAAAAGAAAAGGC TTATACATCAGTGAAGATCCTATAAGTTTTTCGGAACACGAATCCTTATCCAAAACTGGAAAAA GAAAACTCAAGCATGAATTTGCTGTATTATCTAGGGAAATATCAGGTGAAAAGTACCAATCCGA TAAAATCGTGGAAACCACTGCACAAACTATGCATATGACTTCAAAAAATTTCTCAAAATAATTA CTGTATGAGGGGAGGAGATAATGAGATACCATACGAAATCATGGAGACCCTAATATTCTAAAAT ATAACTACACATGGAACATTTACTTGTAGAAGAATCATTCTCTACACAACGACAATTTGGTGTT GATTCTGCAAACTAGATTTATCATCAGATGGTAGGACCATAGGAACTTACCACGGAGGTGCTCT TTTAACGTCCCGTTATGCATGAATTCATACACAAGTATATTTTTACCATCTTGCTGGCTGTAAC CAAGGAAGCTCACCAGGTTTCTATGATGAATTCTTGAAAGCAATGTTACCTGAAACATAAGTCC GTCAGATACTATACTACATAGAGGGTGAGGGTCCATAGGATGTTCCAAATAGAAAATGTTCATA TCTTATACTACTTAAAATAAATTGAGGTTATAAAGTATATGTAACGCAACATGGTCACATCCCA TTAGTGTAGGTCTATCAATTAAGTAGGAAATGAATGTGTCCCAGAATATACTGGGCTTCAGCTT CAGCTTCAAGGTTTCAATCTACCAAGCAGTGATAAAATTAGCAATAGGTACGCAAGTTTTATTT ATATCTTAAACTGTTAAACTGTGAAAAACAGCCCATTTTGGGCCGAACACAAAGCCTTTTTGGG CCCTGGGTCAACACTCATTAAACTGTGTGCACAAAGGTTAAAATTCATCTGTTTTTGGCTAAAG GCTACTCATGAGTAATTGGGTCAAAGGCTAATATAGATGCACTTTTGGGCCCAAGGTTGACTCA CGAAGTTTTGGGCTGAAGGCAAGTTGTAACGCGTGTTTTTGGCCCCAGCTATAATACTTGTGCC CAAGACTAATACTCATGTGCACTTTGGCCAAAGGCTAATAATATTCATATGTTTTTGGCCCAAA TTAATACTCACAAAATTTTTGGGTTGAAGGCTATTAATCATTTGTTTTGGGGTCAAAGGTTATA ATCCATACATTTTTAGCCCCAAGGTTAATAATCATGATTTTTTTGAGCAGAATGCTAACATTCA TGTGTTTATAGGTCTAAGGTTGAGGTTGAGTTCTTTTCAGCAACTTGAAACAACAACTTCCTCG GTTTCCGTCAACACGCTTCCCAAACTGCTAAACGATGCGTTTTGTGAAATATATAGAAGTTCTT TAAAAAAAATCAAATAAATCCATTTATTAAATTTATAATAGTTAATACTCCCTCCATCCTCAAA TGTAAGACATATTTCTTTTGTCACCAAGACAAAGGAGAAATTAACTCATCTCCCATGTAACAAA ATCAAGGAACTATATGCATGCAACCAATGAATATTAAGATGGTTGCTTGGGTTCCTGTCAACAA TTAATTTAGCACATGAAGACTCCAAATATAATCATCTCTTTTAGAAAAACCAAAAAAAAAAAAA GCCTAACACCTTTGGATGGAGGGAGTACGTAATTAATTATGTGCTAATGATATGCCCCGTTTCC GAGCTGCGAACCGCTGCAGCCAAACTGCTGGTTCGAACTAGCCCTAAGACTAAAGAAATTATGA GGCAAAAGCTAATATTCATGTGTTTTTTGACCCAAGGCTAACACTCTTGAAATTTTTAGACGAA GCCCAAATTCATGCACTTTTGGTCCCAAGGTCAATACTAATGAAATTTTGTGCCCAAGGTTAAT ACTTGTATGTTTTTTTGGTGGAAAAGTAATACACCTGTGTATTTGGAGTAAAGGCAAATATTCT TGTGTTTTTTCAGCTCAAGGATGATATTCATGACATTTTGAGTGAAGGTAATATTTATGTGATT TGGGCTCGAAGGTAATATTCATGTGTTTTTAAGCTGAAGGCTAAACAATCATGCATTTTTGGCC CAAGCTAACATTCATTTGTTTTTGGGCCCAAGGTTAATACTCATGTGTTTTTGGACCAAAGACT TAATAGTTGTGTAATTGAGGTGAAGGCTATAGTCAACCATTTTTGGGCCCAAGGTTAATTTTTG GCCAAACGGGAATAGTCATCCATTTTTAGCCATAGTTTAATAGTCTTCATATTTTAGGCCGAAC GCTAACACTTACTGTGTATGTGATTTATATTTCAAGAAAATATTATAAGGCAAGAAAAGAAACA TACCTCATTCAAGAATTCTCGGATGCCTTGATAGGAGTCATTTGTGAGAAGTTTGACTGCGATT TCTCTCCCATCTGTAAGCTTTCCATAGTATACTATGCCAAACCCTCCCGAACCAATTCTTCTGT CAAATTTGTCAGTAGCATCTTCAATTTCAGACAATGCAAATCTGTGCGCCGATTCCGTGGCCAC TTCACTGAAAAATGAGCCTAGCTTTTTTGCTGGTGCCGCAATAACAACAGTTTCTGGAGACACA AAGTAATTACTACGCGACCATACACCATACCAGATATGCCCAATGAGCTAAAGAATACGCACCG TCCGATGATTTCTTCTTCCTTTTGCATGTGAACAGGTAACAAACAATAGCAGCAACAAGAATCA AAATGGCCCCAACCACAGCACATACAATAATTACTATAGTGCGGCCAGTGTTACTGTGTCCCAT GCGAAGGTCACTGTTTCCTGAGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.10829477

Conservation Information
Conserved circRNAs	NA
PMCS	0.10829477

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							121412-117930(+)
121474-121482(-)
117946-121482(-)
						
						Potential amino acid sequence
						
							MAPTTAHTIITIVRPVLLCPMRRSLFPEKPFNNVTAVEPKVVI*(+)
MGHSNTGRTIVIIVCAVVGAILILVAAIVCYLFTCKRKKKSSDETVVIAAPAKKLGSFFSEVAT
ESAHRFALSEIEDATDKFDRRIGSGGFGIVYYGKLTDGREIAVKLLTNDSYQGIREFLNEVTLL
SRIHHRNLVSFLGYSQQDGKNILVYEFMHNGTLKEHLRGGPDDVKITSWVKRLEIAEDAAKGIE
YLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPVVDGSHVSSIVRGTVGYLDPEYYISQ
QLTEKSDMYSFGVILLELISGHEPISNDNFGLHCRNIVEWLLRKQ*(-)
MSQSQMTTLGSTAVTLLNGFSGNSDLRMGHSNTGRTIVIIVCAVVGAILILVAAIVCYLFTCKR
KKKSSDETVVIAAPAKKLGSFFSEVATESAHRFALSEIEDATDKFDRRIGSGGFGIVYYGKLTD
GREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRNLVSFLGYSQQDGKNILVYEFMHNGTLKEHL
RGGPDDVKITSWVKRLEIAEDAAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK
PVVDGSHVSSIVRGTVGYLDPEYYISQQLTEKSDMYSFGVILLELISGHEPISNDNFGLHCRNI
VEWLLRKQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	121412-117930(+) 121474-121482(-) 117946-121482(-)
Potential amino acid sequence	MAPTTAHTIITIVRPVLLCPMRRSLFPEKPFNNVTAVEPKVVI(+) MGHSNTGRTIVIIVCAVVGAILILVAAIVCYLFTCKRKKKSSDETVVIAAPAKKLGSFFSEVAT ESAHRFALSEIEDATDKFDRRIGSGGFGIVYYGKLTDGREIAVKLLTNDSYQGIREFLNEVTLL SRIHHRNLVSFLGYSQQDGKNILVYEFMHNGTLKEHLRGGPDDVKITSWVKRLEIAEDAAKGIE YLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPVVDGSHVSSIVRGTVGYLDPEYYISQ QLTEKSDMYSFGVILLELISGHEPISNDNFGLHCRNIVEWLLRKQ(-) MSQSQMTTLGSTAVTLLNGFSGNSDLRMGHSNTGRTIVIIVCAVVGAILILVAAIVCYLFTCKR KKKSSDETVVIAAPAKKLGSFFSEVATESAHRFALSEIEDATDKFDRRIGSGGFGIVYYGKLTD GREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRNLVSFLGYSQQDGKNILVYEFMHNGTLKEHL RGGPDDVKITSWVKRLEIAEDAAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSK PVVDGSHVSSIVRGTVGYLDPEYYISQQLTEKSDMYSFGVILLELISGHEPISNDNFGLHCRNI VEWLLRKQ*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0102900_circ_g.1

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