Plant Circular RNA Database

Detail information of AT5G03270_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G03270_circ_g.1
					
						ID in PlantcircBase
						ath_circ_036132
					
						Alias
						5:782244-783833
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 782244-783833  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT5G03270						
					
						Parent gene annotation
						
							Cytokinin riboside 5'-monophosphate phosphoribohydrolase
							
						Parent gene strand
						+
					
						Alternative splicing
						
							5_circ_ag.2 5_circ_ag.3 AT5G03240_circ_g.1 AT5G03240_circ_g.2 AT5G03240_circ_g.3 AT5G03240_circ_g.4 AT5G03240_circ_g.5 AT5G03240_circ_g.6 AT5G03240_circ_g.7 AT5G03240_circ_g.8 AT5G03240_circ_g.9 AT5G03240_circ_g.10 AT5G03280_circ_g.1 AT5G03280_circ_g.2 AT5G03280_circ_g.3 AT5G03280_circ_g.4 AT5G03290_circ_g.1 AT5G03290_circ_g.2 AT5G03290_circ_g.3 AT5G03290_circ_g.4 AT5G03290_circ_g.5 AT5G03290_circ_g.6 AT5G03290_circ_g.7 AT5G03290_circ_g.8 AT5G03290_circ_g.9 AT5G03300_circ_g.1 AT5G03300_circ_g.2 AT5G03300_circ_g.3 AT5G03300_circ_g.4 AT5G03300_circ_g.5 AT5G03320_circ_g.1 AT5G03320_circ_g.2 AT5G03340_circ_g.1 AT5G03340_circ_g.2 AT5G03340_circ_g.3 AT5G03380_circ_g.1 AT5G03380_circ_g.2 AT5G03380_circ_g.3 AT5G03380_circ_g.4 AT5G03406_circ_g.1 AT5G03415_circ_g.1 AT5G03420_circ_g.1 AT5G03420_circ_g.2 AT5G03420_circ_g.3 AT5G03420_circ_g.4 AT5G03420_circ_g.5 AT5G03430_circ_g.1 AT5G03430_circ_g.2 AT5G03430_circ_g.3 AT5G03430_circ_g.4 AT5G03430_circ_g.5 AT5G03430_circ_g.6 AT5G03430_circ_g.7 AT5G03430_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G03440_circ_g.1 AT5G03440_circ_g.2 AT5G03450_circ_g.1 AT5G03450_circ_g.2 AT5G03450_circ_g.3 AT5G03450_circ_g.4 AT5G03460_circ_g.1 						
					
						Support reads
						3
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G03270.2:5
AT5G03270.1:5

General Information
CircRNA Name	AT5G03270_circ_g.1
ID in PlantcircBase	ath_circ_036132
Alias	5:782244-783833
Organism	Arabidpsis thaliana
Position	chr5: 782244-783833 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT5G03270
Parent gene annotation	Cytokinin riboside 5'-monophosphate phosphoribohydrolase
Parent gene strand	+
Alternative splicing	5_circ_ag.2 5_circ_ag.3 AT5G03240_circ_g.1 AT5G03240_circ_g.2 AT5G03240_circ_g.3 AT5G03240_circ_g.4 AT5G03240_circ_g.5 AT5G03240_circ_g.6 AT5G03240_circ_g.7 AT5G03240_circ_g.8 AT5G03240_circ_g.9 AT5G03240_circ_g.10 AT5G03280_circ_g.1 AT5G03280_circ_g.2 AT5G03280_circ_g.3 AT5G03280_circ_g.4 AT5G03290_circ_g.1 AT5G03290_circ_g.2 AT5G03290_circ_g.3 AT5G03290_circ_g.4 AT5G03290_circ_g.5 AT5G03290_circ_g.6 AT5G03290_circ_g.7 AT5G03290_circ_g.8 AT5G03290_circ_g.9 AT5G03300_circ_g.1 AT5G03300_circ_g.2 AT5G03300_circ_g.3 AT5G03300_circ_g.4 AT5G03300_circ_g.5 AT5G03320_circ_g.1 AT5G03320_circ_g.2 AT5G03340_circ_g.1 AT5G03340_circ_g.2 AT5G03340_circ_g.3 AT5G03380_circ_g.1 AT5G03380_circ_g.2 AT5G03380_circ_g.3 AT5G03380_circ_g.4 AT5G03406_circ_g.1 AT5G03415_circ_g.1 AT5G03420_circ_g.1 AT5G03420_circ_g.2 AT5G03420_circ_g.3 AT5G03420_circ_g.4 AT5G03420_circ_g.5 AT5G03430_circ_g.1 AT5G03430_circ_g.2 AT5G03430_circ_g.3 AT5G03430_circ_g.4 AT5G03430_circ_g.5 AT5G03430_circ_g.6 AT5G03430_circ_g.7 AT5G03430_circ_g.8 5_circ_ag.9 5_circ_ag.10 AT5G03440_circ_g.1 AT5G03440_circ_g.2 AT5G03450_circ_g.1 AT5G03450_circ_g.2 AT5G03450_circ_g.3 AT5G03450_circ_g.4 AT5G03460_circ_g.1
Support reads	3
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G03270.2:5 AT5G03270.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCCAACCGCTCGACATATTATCGTATCT
GCACCAACCGCAAGAGAGTTGTTTATAAAATTGGAGgtgatgaggaagattgatcttgtttatg
gtggaggaagcataggtttaatgggtttggtgtctcaagctgttcatgatggtggtcgtcatgt
tattgggt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 444
Transcript exons: 782244-782341,782460-782490,782614-782713,783539-783609,
783690-783833
GTGATGAGGAAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTC
AAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAGTCATCCCCAAGCTCCTCATGTTGCAAGA
GTTAACTGGAGAAACAGTAGGAGAAGTGAAGGAAGTTGCAGACATGCATCAGAGAAAAGCTGTG
ATGGCTAAGCATTCTGATGCTTTCATTACTTTGCCTGGTGGCTATGGTACACTAGAGGAGCTAC
TTGAAGTGATAACTTGGGCACAACTTGGTATCCATGATAAACCGGTCGGTTTATTAAACGTTGA
TGGATATTACGATGCATTGCTGTTATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCCA
ACCGCTCGACATATTATCGTATCTGCACCAACCGCAAGAGAGTTGTTTATAAAATTGGAG
						
					

						Genomic sequence
						
							GTGATGAGGAAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTC
AAGCTGTTCATGATGGTGGTCGTCATGTTATTGGGTACTTACTCTATGTTTATTCTATAGTACT
TACTGCATTAAAATTCTCATCATTTTTTGTTGAGAGTTATGAAAATAAAGGTAGATAGGTATGG
TTTTTAATTCTTATTATGATGCAGAGTCATCCCCAAGCTCCTCATGTTGCAAGAGGTATTAATT
GAGTTTTCATTAGAAATCAATGTTCAGTGGATCTGAATAAAGAATAATAACAATAATGGTAATG
ATGATGCTCTTTTTTGTCACTCTGTCAATGTCTCGCAAACAAACTCAAAGTTAACTGGAGAAAC
AGTAGGAGAAGTGAAGGAAGTTGCAGACATGCATCAGAGAAAAGCTGTGATGGCTAAGCATTCT
GATGCTTTCATTACTTTGCCTGGTAATTTTTACTCTCTATCTCTCTCTCCATCTTCTATCTTCA
TTACAAATAATAAAGATAAACTTATGAAAAATTAAATTATTGATATTCACTTGTGAAAACTTTG
CCACTACATTTAGAGTTCCCCAATGTATATGATGCTGAAATATTATAAAGCTAGATGCATATAT
GTATGGTGATGTTTTAGTGTTTGTTTTTTCCCCTACATAATGTAATGTTAGTGCTTTTTTATAA
AAACCTTTTTATTAGTCATTATAGAGAGCTTTAAAGAGTGCGTTTAATAAGTAATAACATGTGG
TTAATATGATATGTGGGAGATTCCAGGAGTCAAAGAATTTAAAAGAATCACGACAAATAGTTTT
GAAATAATTAAAGTGAATAATCAGAAAAAGTCCTTGATCCATCAACATCCAAAAGCAGTGAAAA
TAGATGTCGACAAAGGACATCTGTTTCTTATCCAATTTAAGAAAAAATTTATGTTCGCAATTTA
TATCTGTAAGATTTATATTTCTGAGCAGACATTAAAAGATCGTAATATGAGTTGCAAAATGTTG
TTTTTCTTTTTTGGGTAGTGCTGGTATATTATAAAGTTGAATATTCTGAGAGAAACATAATGGT
AACTATTGTGATGAGTGCACTAACCTTTGACCTTTGACTTAAAAAGTACCAAAGAGAAGAGAAG
GACTACTTTTCATAAATCAGATGTTGACTTTTCTTAAGAGGTCAAAAATGAAAGTGAAAAAAAA
AAAAAATCTTCTTGAGTTTTACTATACGTGCCACTTGACTAAGTCAACGAGTCCTCACTGTCGA
AGTGTCAATCCTCAGGTGGCTATGGTACACTAGAGGAGCTACTTGAAGTGATAACTTGGGCACA
ACTTGGTATCCATGATAAACCGGTATGTAAACCGGTTTGGTCTGGTATAAGATAATAACCGACA
TTTTGATAGAGTTAGCTATTGTTTTCTTTTTCTTGCAGGTCGGTTTATTAAACGTTGATGGATA
TTACGATGCATTGCTGTTATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCCAACCGCT
CGACATATTATCGTATCTGCACCAACCGCAAGAGAGTTGTTTATAAAATTGGAG
						
					

			
		

Sequences
Splice junction sequence	ATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCCAACCGCTCGACATATTATCGTATCT GCACCAACCGCAAGAGAGTTGTTTATAAAATTGGAGgtgatgaggaagattgatcttgtttatg gtggaggaagcataggtttaatgggtttggtgtctcaagctgttcatgatggtggtcgtcatgt tattgggt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 444 Transcript exons: 782244-782341,782460-782490,782614-782713,783539-783609, 783690-783833 GTGATGAGGAAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTC AAGCTGTTCATGATGGTGGTCGTCATGTTATTGGAGTCATCCCCAAGCTCCTCATGTTGCAAGA GTTAACTGGAGAAACAGTAGGAGAAGTGAAGGAAGTTGCAGACATGCATCAGAGAAAAGCTGTG ATGGCTAAGCATTCTGATGCTTTCATTACTTTGCCTGGTGGCTATGGTACACTAGAGGAGCTAC TTGAAGTGATAACTTGGGCACAACTTGGTATCCATGATAAACCGGTCGGTTTATTAAACGTTGA TGGATATTACGATGCATTGCTGTTATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCCA ACCGCTCGACATATTATCGTATCTGCACCAACCGCAAGAGAGTTGTTTATAAAATTGGAG
Genomic sequence	GTGATGAGGAAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTC AAGCTGTTCATGATGGTGGTCGTCATGTTATTGGGTACTTACTCTATGTTTATTCTATAGTACT TACTGCATTAAAATTCTCATCATTTTTTGTTGAGAGTTATGAAAATAAAGGTAGATAGGTATGG TTTTTAATTCTTATTATGATGCAGAGTCATCCCCAAGCTCCTCATGTTGCAAGAGGTATTAATT GAGTTTTCATTAGAAATCAATGTTCAGTGGATCTGAATAAAGAATAATAACAATAATGGTAATG ATGATGCTCTTTTTTGTCACTCTGTCAATGTCTCGCAAACAAACTCAAAGTTAACTGGAGAAAC AGTAGGAGAAGTGAAGGAAGTTGCAGACATGCATCAGAGAAAAGCTGTGATGGCTAAGCATTCT GATGCTTTCATTACTTTGCCTGGTAATTTTTACTCTCTATCTCTCTCTCCATCTTCTATCTTCA TTACAAATAATAAAGATAAACTTATGAAAAATTAAATTATTGATATTCACTTGTGAAAACTTTG CCACTACATTTAGAGTTCCCCAATGTATATGATGCTGAAATATTATAAAGCTAGATGCATATAT GTATGGTGATGTTTTAGTGTTTGTTTTTTCCCCTACATAATGTAATGTTAGTGCTTTTTTATAA AAACCTTTTTATTAGTCATTATAGAGAGCTTTAAAGAGTGCGTTTAATAAGTAATAACATGTGG TTAATATGATATGTGGGAGATTCCAGGAGTCAAAGAATTTAAAAGAATCACGACAAATAGTTTT GAAATAATTAAAGTGAATAATCAGAAAAAGTCCTTGATCCATCAACATCCAAAAGCAGTGAAAA TAGATGTCGACAAAGGACATCTGTTTCTTATCCAATTTAAGAAAAAATTTATGTTCGCAATTTA TATCTGTAAGATTTATATTTCTGAGCAGACATTAAAAGATCGTAATATGAGTTGCAAAATGTTG TTTTTCTTTTTTGGGTAGTGCTGGTATATTATAAAGTTGAATATTCTGAGAGAAACATAATGGT AACTATTGTGATGAGTGCACTAACCTTTGACCTTTGACTTAAAAAGTACCAAAGAGAAGAGAAG GACTACTTTTCATAAATCAGATGTTGACTTTTCTTAAGAGGTCAAAAATGAAAGTGAAAAAAAA AAAAAATCTTCTTGAGTTTTACTATACGTGCCACTTGACTAAGTCAACGAGTCCTCACTGTCGA AGTGTCAATCCTCAGGTGGCTATGGTACACTAGAGGAGCTACTTGAAGTGATAACTTGGGCACA ACTTGGTATCCATGATAAACCGGTATGTAAACCGGTTTGGTCTGGTATAAGATAATAACCGACA TTTTGATAGAGTTAGCTATTGTTTTCTTTTTCTTGCAGGTCGGTTTATTAAACGTTGATGGATA TTACGATGCATTGCTGTTATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCCAACCGCT CGACATATTATCGTATCTGCACCAACCGCAAGAGAGTTGTTTATAAAATTGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.188256168

Conservation Information
Conserved circRNAs	NA
PMCS	0.188256168

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT5G03270_circ_g.1

Address

Any questions?

Supported by