Detail information of AT2G05920_circ_g.6


General Information
CircRNA Name AT2G05920_circ_g.6
ID in PlantcircBase ath_circ_012939
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2270884-2271122  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G05920
Parent gene annotation Subtilisin-like protease SBT1.8
Parent gene strand -
Alternative splicing AT2G05920_circ_g.5
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05920.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAATCTTCCCACGAACAATACTCGAATCAAGCGAACCAGGTAAACAAAGATTACTCGAACTA
CTATTCCCTTTATTATAAACCAATTCAAGCGGCTTCcgatcgcgggaagcaaatgactatccgc
cacaagctcctctccactcgcagcagtattcgccattatcatccctaaaccaccagcatctcta
accacagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGATCGCGGGAAGCAAATGACTATCCGCCACAAGCTCCTCTCCACTCGCAGCAGTATTCGCCAT
TATCATCCCTAAACCACCAGCATCTCTAACCACAGCTCCTTTCTCAACTCTAGCATTAACACCT
CTATCACAAACAACAATCTTCCCACGAACAATACTCGAATCAAGCGAACCAGGTAAACAAAGAT
TACTCGAACTACTATTCCCTTTATTATAAACCAATTCAAGCGGCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.182775349
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017