Detail information of Zm00001d012674_circ_g.4


General Information
CircRNA Name Zm00001d012674_circ_g.4
ID in PlantcircBase zma_circ_009824
Alias zma_circ_0002935
Organism Zea mays
Position chr8: 178401004-178408923  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d012674
Parent gene annotation chorismate mutase1
Parent gene strand +
Alternative splicing Zm00001d012674_circ_g.1 Zm00001d012674_circ_g.2 Zm00001d012674_circ_g.3 Zm00001d012674_circ_g.5
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d012674_T010:4
Zm00001d012674_T005:3
Zm00001d012674_T012:4
Zm00001d012674_T001:3
Zm00001d012674_T011:4
Zm00001d012674_T002:5
Zm00001d012674_T013:2
Zm00001d012674_T004:2
Zm00001d012674_T006:1
Zm00001d012674_T008:1
Zm00001d012674_T007:2
Zm00001d012674_T009:2
Zm00001d012674_T003:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGACAATGTATTTTGATGAACTTCTTCCAAGATTGGTGAAAGAAGGAAGTGATGGTAATGCT
GGATCCAATGCTCTTTGTGACACAACCTGCTTGCAGgcactctccagaaggatccactatggga
agtttgtggcagaggccaagtttcaagagtcccctgaagcttacacgccagccataatagccca
agtctgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.830670644
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description regulating the response to N deficiency
Other Information
References Ma et al., 2021b