Detail information of 3_circ_ag.3


General Information
CircRNA Name 3_circ_ag.3
ID in PlantcircBase ath_circ_023261
Alias Ath_circ_FC2128
Organism Arabidpsis thaliana
Position chr3: 8046244-8050742  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT3G22760_circ_g.4 AT3G22780_circ_g.1
Support reads 8
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTATCTGTTGGCGTAAATGTGCAGGCGTAAATCTGAACAAGCTGGGGAGGGTGAGTCATGTAA
ACGATGCAACTGCAAAAAGTCTAAGTGTTTGAAGCTttactgtgaatgctttgctgctggattt
tattgcatagagccatgttcatgtataaattgcttcaacaaacctatccataaagatgttgtcc
tggctact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTACTGTGAATGCTTTGCTGCTGGATTTTATTGCATAGAGCCATGTTCATGTATAAATTGCTTC
AACAAACCTATCCATAAAGATGTTGTCCTGGCTACTCGCAAACAGATTGAATCCCGCAATCCAC
TTGCATTTGCTCCTAAAGTCATCAGAAACTCAGATTCCATCATTGAAGTTGGTGTAAGTGTTCT
CAATATTTCCTTTTACTTATCATCCTCAATACATTTATCTCATTGAAAAGGCTATAAAATTCTG
CATTGGTTCACAGGAGGATGCAAGTAAAACTCCAGCTTCAGCGCGACACAAACGAGGCTGTAAC
TGCAAGAAATCAAACTGTCTGAAGAAATACTGTGAATGCTATCAGGTATTTCCATTAAACTCCA
TACACATCAGTGTAAGATTCCCTTCTGTGGATTGGTTCTGATTCATTGATCGTGTAGGGCGGAG
TTGGTTGTTCTATAAACTGTAGATGTGAAGGATGTAAAAATGCATTTGGCAGAAAAGATGGTTA
GCTTTTACTTCTCCACTTTATCATAAACACACAAGTCTCTTGATCTTTTATTTGACAAGAGTAC
ACAATTTCTTGCAGGGTCTTTGTTCGAACAAGATGAGGAGAATGAAACATCTGGCACACCCGGA
ACAAAGAAAACACAACAGAATGTCGAGTTGTTCAAACCTGCAGCTCCACCTTCAACACCAATTC
CATTTAGGTAAAGAAATAATCTCAAATACAATCAAATATGTGTCCATTTACACTTCTCCTGATT
AACTTTATTAACCTTTGTTTTCAGACAACCACTGGCGCAACTTCCAATCTCATCCAACAACAGA
CTGCTACCTCCACAGTCTCATTTTCATCATGGAGCTATTGGATCATCTTCCTCAGGGATATACA
ACATCAGAAAACCAGACATGAGTTTGTTGTCTCATTCAAGAATCGAGACAATCACAGAGGATAT
TGATGATATGTCTGAGAATCTAATCCATTCTCCAATAACTACTCTATCTCCCAACAGCAAAAGG
GTTTCGTTGTCTCATCTTGATTCACCAGAGTCGACTCCATGGAGAAGAAATGGTGGGGGGAGGA
ATCTGATACGTTCGTTCCCAACGTTTCCTTCTCTCACTCCACACCATTAAAATTCTTTGAATGT
CAACTTCTAGTTGGTAGTTTTAACTTACACAGACAACATACGCAAACATTTACAAGTTTAGTAG
CAGTATTGCGTTAGTTTTTACAATGGTTGTGTAATAAAAATGTTAAGTCATTTATCAATATCTT
GACAACATTCCTCGTCTAATATCACAAATGTAACCTTATTTATTCAACAATTTTCATGTAAAAA
CAATCTTCACAATTAATAATTTATTGACTAACTAATAATAATCTTGTTCAAAGAGGATGACAAA
AGAGAAAGAAAACCAAAAAACAAGCTGGTCGACTAATTAAGTTGCACTAGACTTGGAACATAAG
ACCACACAATTGGGTAACACCTTCTGTCTGATTCTCCAAGATCCACTTCTTTCATGGATCCATC
CACTCCAATGATGTAAGCTATGTAGCGCTGTATTCTGTAGCCTTTATCAAAAACAACAGCGACT
TTCTTCTCCTCGTCAATGAAGAAACTCCCCAAACAAAACTGAAACTGAGGGCCAATGAGTTTTC
TTATACTCACTGATAAGAACACCTTGCTGTTCCAAGACACCGCGTTGGGCTCAATCTTAGACGT
GACCCAGATCTCCATCATTAATGTATCCCACGGCTGATATAAAACAGCAAGCTGCTCGTCTCTA
ACATTGGATACACTCAAAGCATCTTCAGATTCAACAAACTGAAACGGAAGAGGCAAAAGTGGTC
CAAATGTCTCTCTTGTGAAATCAAAAGAGAGTAAGAAAAACTCTTCGTTTGTTTCACTTGTTTC
GTAATACTTCTCTTCAGCAACCCAGAAGGCATTTCCCTTGAGAGACACGCCACTATTAATAGTC
CCTAATTGCCAGTCTGGAGTGACATGAAAAACCCTCCATGAATTAGAGTTAAAATCGTAGATTA
TGAACTCATGAAAATGGGGTCTCAAACAAGTAATACACCTCAAGATTTTGTGGGATTTGCTGCT
CTTGTCGTATCCGAGAGCATAAGAATAGCTGTCGAATTTGTTGAACTGATGTGTGGGCTCGATT
GACCGGGTATGCCCCCAATACGGGTTCCAAACCACGAGCCTAGTCTTGGCTTGGGTGATGCTGA
TGCATAACAATAAACCGTCGCAGTGAAAGACTTGAGATATATCATCAACTTCGTCGCCTAAGCT
AATAACTTTAGCTTCACGTTTTATACATGATGATGATGATGATGATGATGATTCAACGACGTTG
TTATCAAGATTGACTCTCATCAAATAAACCCTAAAATTCATCATCATGACCACCATAAAGTAAA
GAGTAAAGCATTAATTGGGCCAAAAATGTAACGAATGGGCCTGAGTGTTATAGGTCCAGGTAAG
GGAAAGATGACGTCACTTAGTGGATGGACTAAAAGAGTGATATGATTTGGACTTCATAGTTCAC
ACTGTTTCGCACCGGCGCGGACAAAGTTTTTTTTTTGTTCGAAATCCGACAACAACCCTAGATT
ATAAACAAAATAAACCAGTGTCTGCATAGAGGCAATGTAGATGTGATTTTTGCTGGAAAATGGA
CAAATCCCAGAAGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAGGTT
TTTTTCCTTAATTTCCTCAAAGTTCACTCCTTTCGTTCTTTACAAGCTCTGCATTTTTTTTTTG
AAGAAGATAGTGTTCTGTTTTCTGGGTTTTGCTTCATGTTTCTCGCTTCAGGGTTCTGCGATTT
TTTTTGTTGTTTTTTTTGTCGACGAGGTCAATTTCATGAATTGACCAAAAAAGGTCTTATTTTG
TTTCGAAAAATCAATGATTTTGTCTTTTTGGTAAAAACATTTTTAGCTGTGGATTTGCCTTGAG
TCTAATTGTAATTGGTCTACAATGTAGGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTC
CAATTGAGTCGGTCAAATCTATCTCCACTGCTCAAACGTTTAGCTCTCTTAGTTTCACATCTCC
TCCTCCTGTGTTTACTTCTCCTCACGTCATTTCTCACAGAGAATCCAGATTCTTCAGATGGTAA
ACAACCAAATTCTCTTCTTGTTGTTTTAGTAGAGGATGATGATGTTTACTGTTGTAATTGGTGT
TTGTTTTTTGTTGTTGTAGTCATAACTCTGTTGATCGTTCAAAGCACTTAGAATCTTTAGATGG
ATCTGCTGTTAAAGGAGAAGTTGTAGTACCATTAGTTGAAGATCTAAATAAAGAAGCTTCTTTG
GAAGATGAAGAAGAAACTTCTGTTGAAACGTCTTCTGAGCTGCCACAGATCATGAAGTTCGATA
GCCAAACTTCTGAGCATAGTGATTCACCTTGCACTGAAGATGTTGTTATTGAAGCTTCATCTGA
TCCTCCTCGAGGAGACAATGGTTCGTCATCCGAGGATGTCACGATGGGACTTCAGAATATGCTT
GTTGTTCGGGAAGGGAATGACACTCCTGGTTGTGGACGTTTGATCTCAGATGCAACTGAGCTGT
TAGTATTTCGATCTCCGAATGATTCTGAGGCTTTTAGATGCTTGGTCGATAAAATATCAAGCTC
AGAAAGACGGTTCTGTGCTGGTGTCAAGTCTACAAAGCGGCCTGATATCAACAAAGATATTCCA
GCCAATGGATCTAGTAATGAAAATCAGCCTTTGGCTGTGCTTCCTACAAACGAGGTAAATTCAG
GAATACATTTTGAAATGACTTACTTTTCCCTCGAATGTGAATAGTAACTATATTTGGGCTTTTG
ATTAAACTGAGATGTTTATTTTGCGTTGTGTTTGTTTGTGGTAGTCTGTCTTTAACTTGCATCG
TGGTGGCATGCGAAGACGCTGCCTTGACTTTGAGATGCCAGGGAAACGGAAGAAGGATATTGTT
GATGATCAGCAATCTGTGTGTGACAATAATGTGGCTGGTGAATCTTCCTCGAGCTGTGTTGTAC
CTGGTATTGGTCTTCATCTAAACGCCGTTGCAATGTCTGCAAAGGACAGTAACATCAGTGTCAT
ACATGGCTATTCCATATCTGGAGAGATTCAAAAGAGTTTCTCAGGCTCTACCACTCCAATTCAG
TCCCAAGACACTGTGCAAGAAACTTCGGACCAGGCAGAAAACGAACCTGTAGAAGAAGTTCCCA
AAGCATTGGTGTTCCCAGAGTTGAATCTAGGCAGCCTTAAGAAAAAGATGCAAGTTATTTCTTG
AGTAAAGTTACATAACAGATTTGTATATCTACTTTATTTGTGTTTTTCTTATCTGTTGGCGTAA
ATGTGCAGGCGTAAATCTGAACAAGCTGGGGAGGGTGAGTCATGTAAACGATGCAACTGCAAAA
AGTCTAAGTGTTTGAAGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.475022045
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5658
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a