Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d030217_circ_g.2 |
ID in PlantcircBase | zma_circ_006599 |
Alias | zma_circ_0000230, GRMZM2G343916_C1 |
Organism | Zea mays |
Position | chr1: 113699462-113701959 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d030217 |
Parent gene annotation |
Whole genome shotgun sequence of line PN40024 scaffold_7.assembl y12x (Fragment) |
Parent gene strand | + |
Alternative splicing | Zm00001d030217_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d030217_T020:5 Zm00001d030217_T005:5 Zm00001d030217_T001:6 Zm00001d030217_T004:5 Zm00001d030217_T021:5 Zm00001d030217_T002:5 Zm00001d030217_T014:5 Zm00001d030217_T025:4 Zm00001d030217_T027:2 Zm00001d030217_T017:5 Zm00001d030217_T003:5 Zm00001d030217_T011:5 Zm00001d030217_T023:5 Zm00001d030217_T009:4 Zm00001d030217_T013:5 Zm00001d030217_T012:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.105725814 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
113699598-113701956(+) |
Potential amino acid sequence |
MMYGKSLHHEGSCEPRIQEVEAEVQDPSVHPWGGLSTTKDGILTLLDCFINAKSLHEIQNVFDN ARAREREREMLYPDACGGGGRGWISPVMPNYGRGHGTRDTCALHTAHLSCDTLVDFWSALGDET RSSLLRMKEEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTTFN CEVFEDAILVDWHQSLLEQDGIYHHFEWAIGTDEGKSDILNFENVGMIGQVHRKGLDLDQFEDY FVTLRACRLDGRRTEFCVKAHALKGQSCVHRRLIVGDGFVTITKGESIRSFFEHAEEAEEEDED DVVDRDSNDPDGDIAHPQKHAKSPELAREFLLDAAAVIFKEQFWSALSSRARYELLRLDKQTLI EHARKNLYCSRCNGLLLESFTQIMMYGKSLHHEGSCEPRIQEVEAEVQDPSVHPWGGLSTTKDG ILTLLDCFINAKSLHEIQNVFDNARAREREREMLYPDACGGGGRGWISPVMPNYGRGHGTRDTC ALHTAHLSCDTLVDFWSALGDETRSSLLRMKEEDFIERLMHRFDSKRFCRDCRRNVIREFKELK ELKRMRREPRCTSWFCVADTTFNCEVFEDAILVDWHQSLLEQDGIYHHFEWAIGTDEGKSDILN FENVGMIGQVHRKGLDLDQFEDYFVTLRACRLDGRRTEFCVKAHALKGQSCVHRRLIVGDGFVT ITKGESIRSFFEHAEEAEEEDEDDVVDRDSNDPDGDIAHPQKHAKSPELAREFLLDAAAVIFKE QFWSALSSRARYELLRLDKQTLIEHARKNLYCSRCNGLLLESFTQIMMYGKSLHHEGSCEPRIQ EVEAEVQDPSVHPWGGLSTTKDGILTLLDCFINAKSLHEIQNVFDNARAREREREMLYPDACGG GGRGWISPVMPNYGRGHGTRDTCALHTAHLSCDTLVDFWSALGDETRSSLLRMKEEDFIERLMH RFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTTFNCEVFEDAILVDWHQSLLE QDGIYHHFEWAIGTDEGKSDILNFENVGMIGQVHRKGLDLDQFEDYFVTLRACRLDGRRTEFCV KAHALKGQSCVHRRLIVGDGFVTITKGESIRSFFEHAEEAEEEDEDDVVDRDSNDPDGDIAHPQ KHAKSPELAREFLLDAAAVIFKEQFWSALSSRARYELLRLDKQTLIEHARKNLYCSRCNGLLLE SFTQIMMYGKSLHHEGSCEPRIQEVEAEVQDPSVHPWGGLSTTKDGILTLLDCFINAKSLHEIQ NVFDNARAREREREMLYPDACGGGGRGWISPVMPNYGRGHGTRDTCALHTAHLSCDTLVDFWSA LGDETRSSLLRMKEEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVA DTTFNCEVFEDAILVDWHQSLLEQDGIYHHFEWAIGTDEGKSDILNFENVGMIGQVHRKGLDLD QFEDYFVTLRACRLDGRRTEFCVKAHALKGQSCVHRRLIVGDGFVTITKGESIRSFFEHAEEAE EEDEDDVVDRDSNDPDGDIAHPQKHAKSPELAREFLLDAAAVIFKEQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Ma et al., 2021b;Zhang et al., 2019 |