Detail information of Zm00001d030217_circ_g.2


General Information
CircRNA Name Zm00001d030217_circ_g.2
ID in PlantcircBase zma_circ_006599
Alias zma_circ_0000230, GRMZM2G343916_C1
Organism Zea mays
Position chr1: 113699462-113701959  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d030217
Parent gene annotation Whole genome shotgun sequence of line PN40024 scaffold_7.assembl
y12x (Fragment)
Parent gene strand +
Alternative splicing Zm00001d030217_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d030217_T020:5
Zm00001d030217_T005:5
Zm00001d030217_T001:6
Zm00001d030217_T004:5
Zm00001d030217_T021:5
Zm00001d030217_T002:5
Zm00001d030217_T014:5
Zm00001d030217_T025:4
Zm00001d030217_T027:2
Zm00001d030217_T017:5
Zm00001d030217_T003:5
Zm00001d030217_T011:5
Zm00001d030217_T023:5
Zm00001d030217_T009:4
Zm00001d030217_T013:5
Zm00001d030217_T012:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTGATGGTGATATCGCTCATCCACAAAAGCATGCTAAGAGCCCTGAACTTGCAAGAGAATTT
CTTCTGGATGCTGCTGCAGTGATCTTCAAAGAACAGttttggagtgccctgtcatctcgtgcac
ggtacgaactgctaagacttgataaacagacccttattgagcatgctcgcaagaatttgtactg
ttcaaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTTGGAGTGCCCTGTCATCTCGTGCACGGTACGAACTGCTAAGACTTGATAAACAGACCCTTA
TTGAGCATGCTCGCAAGAATTTGTACTGTTCAAGGTGCAACGGGCTGCTTTTGGAAAGTTTCAC
ACAAATAATGATGTATGGGAAGTCACTGCATCATGAAGGTTCGTGTGAGCCAAGGATTCAGGAA
GTTGAAGCAGAAGTTCAGGACCCTTCAGTTCATCCTTGGGGAGGCCTTTCGACAACAAAGGATG
GCATCCTAACTCTTCTTGATTGCTTCATAAATGCAAAATCACTTCATGAGATCCAGAATGTACG
TCTGAAACAGTAGCCTCTGTTTTCTTTAACTTTATCTGGTTCATGAACTTCCTTGATATTTTGT
GTTCTCTGGTTGTCTGTTTTGGCATCTTTCTGTGGCATTCCTTCTCTGAATTTTTACCTTTACC
ATTCTAGAGTTCTTATTCCGATGCACTTTACATTGTTTTGACTAGGTATTTGACAATGCACGTG
CTAGAGAACGTGAACGTGAAATGCTTTACCCTGATGCATGTGGTGGCGGTGGCAGAGGATGGAT
TAGTCCAGTGATGCCTAACTATGGCAGGGGCCATGGAACACGAGATACTTGTGCTTTGCATACT
GCACATCTTTCTTGTGACACTCTAGTGGATTTTTGGTCGGCACTGGGTGATGAAACTAGATCAT
CACTTTTAAGGATGAAGGAAGAGGACTTCATTGAAAGACTCATGCACAGGTGAGTGTAAAAGGT
GCTTTTATTTATACTATTTTTAACTAATTTACTGTGACAAATACTGTCAACACCTCAAGGGATT
CAATAATACAAGTGGGTTTGTCTCTGAACCCACAAATAGGCCATTCTAAGCTGGTTGCTGTCAA
TCGCTTAAAGTGACCTGTTTGTGGGTGTGAAGACAAACCCGCTTGCATCACTAAGTGATGTGCT
ATCATGAATAAGAATGAGATATTGATAGAGAATAAGTTTTAAATGTGTTCAAATTGTTATTGTT
GCTGCTTTGCAAGATGAGTTGATTTCGTTCTTGATGCTGACAGAAATGTCGTAAGGTATATGAA
ATACCATACATAACATTTACTGATTCTACTAATAGTCAGAGTGCATTCAACAAACTAATAAAAT
TCTACATTGTCAGAGGGCCTGATGATAGCAACAACTATATATTTATAAACCCACAGATACATAT
TATCAATTGGTCTGTATTTAACATTGTTCCCACTTTATTTCTGCTGTAAAACTGTTGCGTGTTT
AAGAAAACTTGTTCTAATGTTTTTATGCTTTACACCATTTTGCCTGATACTTAAATGTCGAAAA
AGTCTACTATCTGTAATGTAATGATTAATGAGTAGTGACTGTACCGTGATTTTACCTGTTTAAT
CCAATGCAACCTTTTGCTGAGATGTTCTGTAGGAATGTGGATTCATTTCCAGTTAACAATAGTT
AAATGCTGTTCTAACTTTTTTGGATGAAATTCCTGTGCAGGTTCGACAGCAAAAGATTCTGCAG
AGACTGCAGAAGGAATGTTATTCGTGAATTCAAGGAACTCAAGGAACTAAAGCGCATGCGAAGG
GAACCTCGCTGCACTAGTTGGTTTTGTGTTGCAGATACCACATTTAACTGTGAGGTGATGATAC
TATTCCTTGTCATCCCTCCTATTTGCAAGCTGATGGTTGTCTTGTGTCTTTTTTGGGGACAAGC
ATCCTGTTTTGGTCAGGCCATATGGAGAAAATCCAAATAAAGCAAGAAGAGTCCTAGGATCTTC
TTGCATTCACATTTTTAGTGTAGTAAGGTGACAGGGCTTGCCTAGTTAGCATGTTGACTTTTTT
AAAATATATTTGCAGGTGTTTGAGGATGCTATTCTTGTTGATTGGCATCAATCCTTATTGGAGC
AAGATGGAATTTACCATCATTTCGAGTGGGCTATTGGAACGGATGAAGGAAAATCTGATATTCT
AAACTTTGAAAATGTGGGCATGATTGGGCAAGTCCACAGGAAAGGCCTTGATCTTGATCAGTTT
GAAGACTATTTTGTTACACTGAGAGCATGTAGGCTGGATGGCCGCCGTACAGAATTCTGTGTGA
AGGCCCATGCCTTGAAGGGCCAATCTTGTGTTCACCGGAGGCTAATCGTGGGGGATGGATTTGT
GACAATTACAAAAGGTGAAAGTATTAGAAGTTTCTTTGAGCATGCTGAAGAAGCTGAGGAAGAG
GATGTAAGTGGCTTATATTTTTAATTATTAATGCCAAACATGATCAGGATATTTGTTATTCAGC
AGTTGAACATGCATGGTGCTAGGACTTCATATTGTCTGATTCAATGACATACTCATGAGCAGGA
AGATGATGTAGTGGACAGAGACAGCAATGACCCTGATGGTGATATCGCTCATCCACAAAAGCAT
GCTAAGAGCCCTGAACTTGCAAGAGAATTTCTTCTGGATGCTGCTGCAGTGATCTTCAAAGAAC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.105725814
Functional Information
Coding potential Y
Potential coding position 113699598-113701956(+)
Potential amino acid sequence MMYGKSLHHEGSCEPRIQEVEAEVQDPSVHPWGGLSTTKDGILTLLDCFINAKSLHEIQNVFDN
ARAREREREMLYPDACGGGGRGWISPVMPNYGRGHGTRDTCALHTAHLSCDTLVDFWSALGDET
RSSLLRMKEEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTTFN
CEVFEDAILVDWHQSLLEQDGIYHHFEWAIGTDEGKSDILNFENVGMIGQVHRKGLDLDQFEDY
FVTLRACRLDGRRTEFCVKAHALKGQSCVHRRLIVGDGFVTITKGESIRSFFEHAEEAEEEDED
DVVDRDSNDPDGDIAHPQKHAKSPELAREFLLDAAAVIFKEQFWSALSSRARYELLRLDKQTLI
EHARKNLYCSRCNGLLLESFTQIMMYGKSLHHEGSCEPRIQEVEAEVQDPSVHPWGGLSTTKDG
ILTLLDCFINAKSLHEIQNVFDNARAREREREMLYPDACGGGGRGWISPVMPNYGRGHGTRDTC
ALHTAHLSCDTLVDFWSALGDETRSSLLRMKEEDFIERLMHRFDSKRFCRDCRRNVIREFKELK
ELKRMRREPRCTSWFCVADTTFNCEVFEDAILVDWHQSLLEQDGIYHHFEWAIGTDEGKSDILN
FENVGMIGQVHRKGLDLDQFEDYFVTLRACRLDGRRTEFCVKAHALKGQSCVHRRLIVGDGFVT
ITKGESIRSFFEHAEEAEEEDEDDVVDRDSNDPDGDIAHPQKHAKSPELAREFLLDAAAVIFKE
QFWSALSSRARYELLRLDKQTLIEHARKNLYCSRCNGLLLESFTQIMMYGKSLHHEGSCEPRIQ
EVEAEVQDPSVHPWGGLSTTKDGILTLLDCFINAKSLHEIQNVFDNARAREREREMLYPDACGG
GGRGWISPVMPNYGRGHGTRDTCALHTAHLSCDTLVDFWSALGDETRSSLLRMKEEDFIERLMH
RFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVADTTFNCEVFEDAILVDWHQSLLE
QDGIYHHFEWAIGTDEGKSDILNFENVGMIGQVHRKGLDLDQFEDYFVTLRACRLDGRRTEFCV
KAHALKGQSCVHRRLIVGDGFVTITKGESIRSFFEHAEEAEEEDEDDVVDRDSNDPDGDIAHPQ
KHAKSPELAREFLLDAAAVIFKEQFWSALSSRARYELLRLDKQTLIEHARKNLYCSRCNGLLLE
SFTQIMMYGKSLHHEGSCEPRIQEVEAEVQDPSVHPWGGLSTTKDGILTLLDCFINAKSLHEIQ
NVFDNARAREREREMLYPDACGGGGRGWISPVMPNYGRGHGTRDTCALHTAHLSCDTLVDFWSA
LGDETRSSLLRMKEEDFIERLMHRFDSKRFCRDCRRNVIREFKELKELKRMRREPRCTSWFCVA
DTTFNCEVFEDAILVDWHQSLLEQDGIYHHFEWAIGTDEGKSDILNFENVGMIGQVHRKGLDLD
QFEDYFVTLRACRLDGRRTEFCVKAHALKGQSCVHRRLIVGDGFVTITKGESIRSFFEHAEEAE
EEDEDDVVDRDSNDPDGDIAHPQKHAKSPELAREFLLDAAAVIFKEQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019