Detail information of AT3G20720_circ_g.6


General Information
CircRNA Name AT3G20720_circ_g.6
ID in PlantcircBase ath_circ_023009
Alias NA
Organism Arabidpsis thaliana
Position chr3: 7242808-7245267  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT3G20720
Parent gene annotation Amino-terminal region of chorein
Parent gene strand +
Alternative splicing AT3G20720_circ_g.1 AT3G20720_circ_g.2 AT3G20720_circ_g.3 AT3G20720_circ_g.4 AT3G20720_circ_g.5 AT3G20720_circ_g.7
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G20720.1:5
AT3G20720.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGGTCCAGGAGAGGGTCTGTCTAGAGGATTAGATCATTTATCTTCTGGACCTATGTCAAAAC
TTTTCAAAGCATCTATAGTTGATGACAGGAAAAAGGaattccaactggaactgctgatgcaatc
actccttttttctcgggtatgttctcactgattcttaaatttcgatatagaaacaattcttgca
ttcacatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTCCAACTGGAACTGCTGATGCAATCACTCCTTTTTTCTCGGGTATGTTCTCACTGATTCTT
AAATTTCGATATAGAAACAATTCTTGCATTCACATCTGCACCATGGAACTTTCTTAGTTCTGGG
AAATCGTAAACCAAATTTCAGGAACTCTAGTTCGTATGATTTAGTTCTAAGTGTGTATAAGTTT
AGTACGAGTTGGAACAAGACGCACACATTATCTATAATAAAATCGGATCTCGGGCAATGTGAGG
AATTCATAAAGAAATTAGGGATTTGGACCAGATTTTCTCCCTCGTGAAAATGGTTAATAAACCA
CTCTAATATAATGAATGCATATAATGGGTTTGACCACTCACTTGGTTGTCTCAAGCTCTATATA
TCTCTTCCCAGTCATGTTATGTTCACTAGAAAGTTGTTTGCCCTCAGATGATTTAATGCACTTC
AGTACGCCAAGCATCTTGAATAAAATCTAGTTGTATGGTGCTGAAATCTGACGTGACTAGGCAT
ATTATACTTGCAGGCCTGTGTTTCAGACGGAGAATCAGCTAACTATTTAACTAAGATTTTGATT
GGTGGGCTATTTTTAAGGTGAGTATGCTTATGTCGAGATTATATAGTAATACTCCTGAAGCTAT
TACTTATAATATTGATATATTTTCTTGTGCAAGTGTGGTTCGCTGCTTTAATTTTAAACTTCTT
GCATAATCATTCATGGTTTCAATTCAGGGATGCTTTTTCGCGCTCTCCTTGTGCTCTAATCCAA
CCATCCATGAAAGCTGCTGCCGAAGACCTTGCAATTCCCGACTTTGGTATTAATATTTCCGGAC
TATTTTACAAAATTCTTCTATTGTGATCCTGTCAGTTGTTAAGCATTTTTCATGCTGATTAATT
TTTCTTCCATAAATTTGTGGCAGCCAAGAACTTTTGCCCTCTCATATATCCATTGGACAGCGGC
CCGTGGCAAATAGTTCAGGATGTACCCTTGATCTCCCTACACTCTCTTCAGGTCAAGCCATCCC
CAAAACCCCCACACTTTTTCTCAAAGACAGTTATCCAGTGCCAACCCCTCATGGTATGTATATA
TCACGTAAAAGTCAAAATTTTCTCTTTTTCACATATTCTTGACCATTTTCTTTTTCTATCCTTT
CTCAGGTTCATCTTCAGGAAGAAGCTTGTTTAAGAATTTCTTCTTTTCTGGCTGATGGCATTGT
TGTAAATCCTGGTGATGTTTTACCTGATAACTCTGTTAACTCTCTTCTTTTCACCCTCAAAGAG
TTAGATGTCTCTGTTCCATTAGACATGAGTAATTTGCAAGATTCAGCAATTGAAGAAGACCTAT
CCGTAAAAAAGTCCTTCGTTGGAGCGAGGCTTCATATTGAAAACTTGTCTTTTGCGGAGTCACC
TACCCTAAAAGTTCGGCTACTAAACCTGGAGAAGGATCCTGCTTGCTTCTGTCTTTGGCCAGGA
CAGCCTATTGACGCCAGCCAAAAGAAATGGACAGCCGGAGCCTCACATTTTAGTTTGGCTTTAG
AAACATCTCCCAACTCAACTCAACTTCAGAGTCCTCGTGGTCCGGAAATGGGTTTGTGGAATTG
TGTTGAAGGAAAAGACGTGTCTATAGAAGTTGCTATGGTATCTGCGGATGGAAAACCTCTGATA
ACAATTCCCCCTCCTGGTGGTATTGTTCGCATAGGAGTTGCTTGTGAGCAATATATTTCACGTG
CTTCAGTGGAGCAGTTATTTTTTGTTCTGGACCTCTATTCTTACTTTGGTAAGGTGAGTGAAAA
GATTTCAATTGTTAAAGAAAGCAAACGCCAGAATACTGTTTCTTTGACTGGAGGGTTGTTGGAG
AAGGTTCCTAGTGATACTGCTGTAAAATTGGCTTTGAAGGATCTGCAGCTTAAGTTTCTTGAGT
CCTCGTTTACTAGTACCCAGGACATGCCACTCGTTCAGTTTCTTGGCAAAGATCTTTCTGTGAA
GGTAACACATAGAACCCTTGGCGGCGCTATTGCAGTATCATCCAACATATACTGGGAAAATATT
GAGGTAGATTGTGTAGATACCGACGTAGAACATGAACATGAGAATAGCTGGAACGGTCACTTAG
TTAGCTGTAATGGGTCTACCCCACTGAGGCGTGTCTTTTGGGTTGTCAACGGAAGACATGATGA
GCATAGTGGCAGCACTCTTACACCTTTTCTGGACATAAGCATAACACATGTGATTCCCCTCAGT
GAAAAGGATATGGAGTGCCACAGTGTAAGCATCGTGGCTTGTATTTCAGGTGTACGCCTAGGAG
GAGGAATGAGCTATGCTGAAGCTCTCTTACACCGATTCGGAATTCTGAATCATGATGGTGGTCC
AGGAGAGGGTCTGTCTAGAGGATTAGATCATTTATCTTCTGGACCTATGTCAAAACTTTTCAAA
GCATCTATAGTTGATGACAGGAAAAAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.157110474
Functional Information
Coding potential Y
Potential coding position 7242828-7245264(+)
Potential amino acid sequence MQSLLFSRACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCP
LIYPLDSGPWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLAD
GIVVNPGDVLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFA
ESPTLKVRLLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGL
WNCVEGKDVSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKV
SEKISIVKESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDL
SVKVTHRTLGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGR
HDEHSGSTLTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHD
GGPGEGLSRGLDHLSSGPMSKLFKASIVDDRKKEFQLELLMQSLLFSRACVSDGESANYLTKIL
IGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSGPWQIVQDVPLISLHSL
QVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKE
LDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFAESPTLKVRLLNLEKDPACFCLWPG
QPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGLWNCVEGKDVSIEVAMVSADGKPLI
TIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKVSEKISIVKESKRQNTVSLTGGLLE
KVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDLSVKVTHRTLGGAIAVSSNIYWENI
EVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGRHDEHSGSTLTPFLDISITHVIPLS
EKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHDGGPGEGLSRGLDHLSSGPMSKLFK
ASIVDDRKKEFQLELLMQSLLFSRACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKA
AAEDLAIPDFAKNFCPLIYPLDSGPWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMV
HLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVK
KSFVGARLHIENLSFAESPTLKVRLLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETS
PNSTQLQSPRGPEMGLWNCVEGKDVSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASV
EQLFFVLDLYSYFGKVSEKISIVKESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSF
TSTQDMPLVQFLGKDLSVKVTHRTLGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSC
NGSTPLRRVFWVVNGRHDEHSGSTLTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGM
SYAEALLHRFGILNHDGGPGEGLSRGLDHLSSGPMSKLFKASIVDDRKKEFQLELLMQSLLFSR
ACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSG
PWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLADGIVVNPGD
VLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFAESPTLKVR
LLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGLWNCVEGKD
VSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKVSEKISIVK
ESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDLSVKVTHRT
LGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGRHDEHSGST
LTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHDGGPGEGLS
RGLDHLSSGPMSKLFKASIVDDRKK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017