Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G20720_circ_g.6 |
ID in PlantcircBase | ath_circ_023009 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 7242808-7245267 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT3G20720 |
Parent gene annotation |
Amino-terminal region of chorein |
Parent gene strand | + |
Alternative splicing | AT3G20720_circ_g.1 AT3G20720_circ_g.2 AT3G20720_circ_g.3 AT3G20720_circ_g.4 AT3G20720_circ_g.5 AT3G20720_circ_g.7 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT3G20720.1:5 AT3G20720.2:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.157110474 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7242828-7245264(+) |
Potential amino acid sequence |
MQSLLFSRACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCP LIYPLDSGPWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLAD GIVVNPGDVLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFA ESPTLKVRLLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGL WNCVEGKDVSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKV SEKISIVKESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDL SVKVTHRTLGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGR HDEHSGSTLTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHD GGPGEGLSRGLDHLSSGPMSKLFKASIVDDRKKEFQLELLMQSLLFSRACVSDGESANYLTKIL IGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSGPWQIVQDVPLISLHSL QVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKE LDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFAESPTLKVRLLNLEKDPACFCLWPG QPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGLWNCVEGKDVSIEVAMVSADGKPLI TIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKVSEKISIVKESKRQNTVSLTGGLLE KVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDLSVKVTHRTLGGAIAVSSNIYWENI EVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGRHDEHSGSTLTPFLDISITHVIPLS EKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHDGGPGEGLSRGLDHLSSGPMSKLFK ASIVDDRKKEFQLELLMQSLLFSRACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKA AAEDLAIPDFAKNFCPLIYPLDSGPWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMV HLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVK KSFVGARLHIENLSFAESPTLKVRLLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETS PNSTQLQSPRGPEMGLWNCVEGKDVSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASV EQLFFVLDLYSYFGKVSEKISIVKESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSF TSTQDMPLVQFLGKDLSVKVTHRTLGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSC NGSTPLRRVFWVVNGRHDEHSGSTLTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGM SYAEALLHRFGILNHDGGPGEGLSRGLDHLSSGPMSKLFKASIVDDRKKEFQLELLMQSLLFSR ACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSG PWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLADGIVVNPGD VLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFAESPTLKVR LLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGLWNCVEGKD VSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKVSEKISIVK ESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDLSVKVTHRT LGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGRHDEHSGST LTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHDGGPGEGLS RGLDHLSSGPMSKLFKASIVDDRKK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |