Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | AT3G20720_circ_g.6 |
| ID in PlantcircBase | ath_circ_023009 |
| Alias | NA |
| Organism | Arabidpsis thaliana |
| Position | chr3: 7242808-7245267 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, PcircRNA_finder |
| Parent gene | AT3G20720 |
| Parent gene annotation |
Amino-terminal region of chorein |
| Parent gene strand | + |
| Alternative splicing | AT3G20720_circ_g.1 AT3G20720_circ_g.2 AT3G20720_circ_g.3 AT3G20720_circ_g.4 AT3G20720_circ_g.5 AT3G20720_circ_g.7 |
| Support reads | 1 |
| Tissues | whole_plant |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | AT3G20720.1:5 AT3G20720.2:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.157110474 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
7242828-7245264(+) |
| Potential amino acid sequence |
MQSLLFSRACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCP LIYPLDSGPWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLAD GIVVNPGDVLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFA ESPTLKVRLLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGL WNCVEGKDVSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKV SEKISIVKESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDL SVKVTHRTLGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGR HDEHSGSTLTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHD GGPGEGLSRGLDHLSSGPMSKLFKASIVDDRKKEFQLELLMQSLLFSRACVSDGESANYLTKIL IGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSGPWQIVQDVPLISLHSL QVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKE LDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFAESPTLKVRLLNLEKDPACFCLWPG QPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGLWNCVEGKDVSIEVAMVSADGKPLI TIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKVSEKISIVKESKRQNTVSLTGGLLE KVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDLSVKVTHRTLGGAIAVSSNIYWENI EVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGRHDEHSGSTLTPFLDISITHVIPLS EKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHDGGPGEGLSRGLDHLSSGPMSKLFK ASIVDDRKKEFQLELLMQSLLFSRACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKA AAEDLAIPDFAKNFCPLIYPLDSGPWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMV HLQEEACLRISSFLADGIVVNPGDVLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVK KSFVGARLHIENLSFAESPTLKVRLLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETS PNSTQLQSPRGPEMGLWNCVEGKDVSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASV EQLFFVLDLYSYFGKVSEKISIVKESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSF TSTQDMPLVQFLGKDLSVKVTHRTLGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSC NGSTPLRRVFWVVNGRHDEHSGSTLTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGM SYAEALLHRFGILNHDGGPGEGLSRGLDHLSSGPMSKLFKASIVDDRKKEFQLELLMQSLLFSR ACVSDGESANYLTKILIGGLFLRDAFSRSPCALIQPSMKAAAEDLAIPDFAKNFCPLIYPLDSG PWQIVQDVPLISLHSLQVKPSPKPPHFFSKTVIQCQPLMVHLQEEACLRISSFLADGIVVNPGD VLPDNSVNSLLFTLKELDVSVPLDMSNLQDSAIEEDLSVKKSFVGARLHIENLSFAESPTLKVR LLNLEKDPACFCLWPGQPIDASQKKWTAGASHFSLALETSPNSTQLQSPRGPEMGLWNCVEGKD VSIEVAMVSADGKPLITIPPPGGIVRIGVACEQYISRASVEQLFFVLDLYSYFGKVSEKISIVK ESKRQNTVSLTGGLLEKVPSDTAVKLALKDLQLKFLESSFTSTQDMPLVQFLGKDLSVKVTHRT LGGAIAVSSNIYWENIEVDCVDTDVEHEHENSWNGHLVSCNGSTPLRRVFWVVNGRHDEHSGST LTPFLDISITHVIPLSEKDMECHSVSIVACISGVRLGGGMSYAEALLHRFGILNHDGGPGEGLS RGLDHLSSGPMSKLFKASIVDDRKK(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |