Detail information of AT2G11225_circ_g.1


General Information
CircRNA Name AT2G11225_circ_g.1
ID in PlantcircBase ath_circ_013157
Alias 2:4478871-4479461
Organism Arabidpsis thaliana
Position chr2: 4478871-4479461  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G11225
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues flower
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered AT2G11225.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGTGGATAAGAACCGAGAAGACCAACTCAAAGATCGCTGCCGTATTCTATCAACAATCTGAT
TGAAGAGATCTCTCTTCTTTCTACCAAACATCTTAGgacccattggagttgaggaggttgaaag
agatagccacggttcgttccaaaccaaagtatccaagcccgatccaatcactttccccagctga
gatttgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACCCATTGGAGTTGAGGAGGTTGAAAGAGATAGCCACGGTTCGTTCCAAACCAAAGTATCCAA
GCCCGATCCAATCACTTTCCCCAGCTGAGATTTGATTAGATCTTTGCCCGTACAAATGCCTCTC
CAACCGTGAGAAGAAGCAGCAGTGACTGAGCAGTCTAGGAAGGACGAGGTTCGACAATACTTTC
CTAGCAGAATTCTAACCAAAACACACGATGGAGATTGCACAATACGCCAACTCAACTTTGCAAG
CAAGGCATCATTAAAATTTGTAATATCTTTGAAACCAAGTCCACCCTCCTTCTTGTTCTTTGCC
ATTTTTGACCAGGCTATCCAACACATCTTCTTTTTATCTGCAGAAGAGTCCCACCAAAAATGAG
TGAGGGCTGATTGGATTCTCTTACAAAGAGAGACAAGAAGTTTGAAGCAGGACATGGTATAGGT
AGGCATCGATGCTAGTACAGACTTCAACATTGTGGTTTTGCCCGCAGTGGATAAGAACCGAGAA
GACCAACTCAAAGATCGCTGCCGTATTCTATCAACAATCTGATTGAAGAGATCTCTCTTCTTTC
TACCAAACATCTTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.16959619
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020