Detail information of Os11g0170300_circ_g.1


General Information
CircRNA Name Os11g0170300_circ_g.1
ID in PlantcircBase osa_circ_008603
Alias NA
Organism Oryza sativa
Position chr11: 3419448-3423634  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0170300
Parent gene annotation Similar to CBS domain containing protein. (Os11t0170300-01)
Parent gene strand -
Alternative splicing Os11g0170300_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0170300-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTCGCCGCCATCCGCTGGCAAGCCTCCGCCACCGTCGTCCCCTCCGGGATCGTCACCGCC
TTCGTCAGCCGCAGCTTCTTCACCGTCCTCTCCCCTcttcaatccagaagatttagcatggagc
acagccccggtaagatcagtatccgtagtgagcaacaccctatcaccttcatcatcatcatact
gtacggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAATCCAGAAGATTTAGCATGGAGCACAGCCCCGGTAAGATCAGTATCCGTAGTGAGCAAC
ACCCTATCACCTTCATCATCATCATACTGTACGGAACATTATCAAAATTTAGCTTGTAATTGTG
GCTGAGGTGTGATAATTGAGCTGTAAGTGAAGTGCTTGTAACAGTTAAGGGTGCATTCACAATT
TCATGGGATAATTAGTTACCAGCGCTACTCAAAATAAGACCGTTTTATGCCAGTCAACTTATAA
ATTTCTATAATACAGGCAACACTATATATAGTCTCTATGGTTCAATATAATGTCTATAAGAAAA
TCAGGATACTGAGATACAGATATGGGGTGACATAAGATAAAGATAAATTCTTATTCTTGAAGTG
GATGGTGGTTAAGTACTTTCTTACATCAGTTAGCATTCCATATAAAACAACAGAACTTCTTGAA
CGATGATCAGACTGACAACCTTTTTTTTTTTTTTTGCTTCCAAACACTAACGAAATACATAAAA
TAAGGGACAACAAATTACCAAAAGTTGAACTGTGCCCTTTTCGCCATCAATGCCTAATCTTTGC
ACCACAGAAGACACCAGCTCATGTAAACTCTCTGAACCTGCAGAGACGGAACAAACCAAACTGT
TAGTTAGAGCAGTACAACCATAGTTTAACATTCAACCAACTTGTAACACCTACCACATGCAAAT
CTATGCATACGTCCCTTCTGGTCCTCAATCTTAAAGACAAATGAATTGCCAACAACAGGAGGAT
TAATGCTACTCCTGCCATCTCCAGCCTCTGATGGCATGAGCAAAGATATTTCACTGAACAATGC
AAAAATGCAGGTAAGAATTGCAAATTTGAAAAAGAGGACAAAGGACAAAAAAGGAAGCGTTAAT
TAACCTGCGACTATCAAATTCCTCATCTGGGGGCTCCAAAGCAAGAGCTGAGTCCCAAAACTTT
TGCATTATTGTGTTTGCCACACCATTCGTGGTCTCAGGACCTCCTTCAACCTTCACACAGAATG
ATGTTAGATGAACGGAAACCATAAGGAAAAAGCAAGGAATGAGAAGCGAAAAAATACGCATGTG
CAGAGAGACCATTGAAATGGCTGCATGGGTAATCTGCAGAACATCCAAGCAAGCAACAACTCTC
CCTTCTGTTCATTTTTAAAATTAAAAAGTTCAGTCAGATATAAAATACTAGTACCATAAAGAGA
AACCTTAGGCTGAAGAAGAGTCAAGTGTTACCTCCATCAACAACAGGAATATGCAAGAATTTGC
CATCGCGCATAATATGCAGAGCATCGAGAATTGATGTGTCTAATGTAGCACATTCAGGGTGTGC
AGTCATTACCTTGAGCAAAACAGTGAGTAATGCTGTTAGTCTAGAATGAATTGTATAACCCATC
GGTAGTTTAAATCATTTAAAATAATATTCAATCTGGAGAAACAACCTTTTCTACATGAGTTAAC
TCAGGAGAGAGATTTTGTGTCACAACGCGCATAAGCACATCCTTTGAGCTGAATTTCACAATGA
CATAGCCATTAGTGCCTTAAGAAATATAAAATAATATAAACTCTAGAATAAAGAATTATTCCAT
AAAAGTATTGAAATGCTTACGTAAAAATCCCTTGCAATGAATTTCCTGCAGTGATAACCACTGA
GTTAACCCGTAATTCATGCATTTTTCGTGCTGCTACACAAACAGGATCCCATGGTGAAACAATT
GCTACTCTGCAAGTTAAAAAAGAGGTAACTCCCATGATTCAAACCACATTATGTTGGATGATCC
ATTTTATACCACCAAGTTTCATTCAGTGTCTACAATATACTACTGATGTCTCACTGCCCACATG
GCCACATGTCATCCTCACAGTGAGTGGTCTACTATGGATATGAATAAAACTCAGTGGCATGGTG
TGGATTTATCCCAAAAATGGAATACTAATAAAAATTTCATGTACTTTGTGTTCTCCGAGATAAT
GGTTGACAATGAAGGTTTAAGCATCCTTTCTCTTAGAGTTTCTATTACACTGGAATGATCTGCA
AATGGTAAACACAGTAATTTGGTCAGCTAAACAAGACCAGAAAACAGTGGTTAAGTGAAATCTA
TTTAGAAAATAATGTACAAATGTATACAGTAAAGCATCAAACATCAAACATAGTTCCAATCCTG
AGAATCATCTCATTATTCTTTGGGATAAACTGGGTATTACAAATTGCTCATAACCTAGTTCACA
TGGCTACTGACTGCAGTATACATTTTCTGTTCTTGTGTAGCAATGAACATTTAGAGTGAAACAA
AGGAAAATAACTAGTCAGCACAATATGCAACAGAAAACCTGGCAAGTTGTCTCCCACTTGACGC
TCAACCCCTTCTACAGCAGCTGCTAATGCACTTCCCTGTTCTGCTGCCTTTTCCAGTCTTGATA
TTGCATCATAGAGGCATTTTGCAATGTCTAGCATGGCAATAACCTCACCATTTTCCACCACTGG
GAGGTGCCTAAATTTTCCTAAAACGTGAGTGTTTCATATTAGCTCTAAGGAGAGGAAAATGAAC
ATACTTGGAATACGGAGAGACAGTATATAAAACAATTGGAATGATGAGCCCATGTTATTAAAAT
AAGAAACAAACTTTCTAACAATGACCATTGATTTCATAGCATAGCTGTTACTGCTTTATTAACA
AGTGAATAATGCTTTCTTAATATGCATACAGGTCATTGGGATTGTAGAATGCTGATGTTCAGAG
GTTAAAGATATGCAGTTGTCCTATAGTAAATTAAATTTAGCCAATGAGACTCTCAATACTGGAA
GAATGTCTAGAAATTAGAAAGTTCCTCTGAAATTAATTTAGATTATTGCTAAAAGGAAATGCAA
CAAACTTGAAAAGACAAACTGATGAATGCATAAAAGACTGCAAGAAAAGAGAAAAAAAAATGGA
AGTACTCAAATAGTTTAATAGTCTTGACCGAATAGATTTTCAAAGAGATTATACTGTAAACAGG
GAAAGAGAATGCTGATTGAAGCTTCTCAGAAATACAAAAATAGTGATAATTTTAAACAATATGG
CTAGTCCAACATTGTCAACAAGGATTTACTGATCACAACATTATTATCCAAAACATTCTCACAA
TAAGTAGCTACAACAAAGATAACTAATGCATATGAAATATACTCCACAGCAGCTTGTAGGAGTT
AAAGGAAGTGAGTTCAATTGACCCAAGTCCGAAGTATCTGAACCAAACAGGCAGATCACTGGGT
CTATGCTTTAAGATTACAAGATACCTTGGACCATTTTCTGCAGTGCTTCAATAGCAAGTGTGTC
AGACATGACATAAACAGGAGTTCGTGTCATGATCTTGGAGGTGATTGTTTGCTCAACCCGCAAC
CCCTCTGCAATCACCCTTTTAGCTATGTCCTGTATCCAAATTAAGCAAATAAGAAACGAAACGA
TAAAGAATCTCCTTATCTCCTTTAAGCTAGAAGTACCAGCCATGTCCTATATCCCAATTATGCA
AATAAGGGCGAAAAGATAAAGCATCTACTTTAAGCTTTAAGTACCATAAGCATAAGATACTTTG
GCATGTACTTATAGTATTAAATCATTGCTGTGATTTGTACAAACTTACAGTCGAACACATAACA
TAGGCACCCGCAAAGAAAAAAGAAAAAAAGAAAACACAACATGGTTGGGCCGCAGTCGAATACA
TAAGAAGCAAAATACATAAATAACAATTGATTCATGGAGCATTAGTCAAAGTATTTAAACTCTC
AACGATTCATTATTGAACAAGTCAGATGTGGCAAAGAGGAGTTGTGCAGTCCTAAGAAAAAGTT
GCAATAACATAAAGCGTCCATCTTTAAGAAATCTAGGCACTTGATGTAGACACAAGCAAAACTC
TATATGGAGTTTCGTAGAGTACAATTATACCAAAACCCACTTATTAGCCAATCGCAACCACCTC
CAGCTTAGAAAACACATCACAGATTGATTTGAAAAATAAAATAAGAAGAGGAAAATTACTTTAT
CGGTGACGATGCCGGAGAGTAATCCGTTGGCGTCCGTGAGCAGCACGGCGTCCACCCTCCTCGC
CGCCATCCGCTGGCAAGCCTCCGCCACCGTCGTCCCCTCCGGGATCGTCACCGCCTTCGTCAGC
CGCAGCTTCTTCACCGTCCTCTCCCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.106196959
Functional Information
Coding potential Y
Potential coding position 3422805-3420013(+)
3423551-3423478(-)
Potential amino acid sequence MILEVIVCSTRNPSAITLLAMSLSVTMPESNPLASVSSTASTLLAAIRWQASATVVPSGIVTAF
VSRSFFTVLSPLQSRRFSMEHSPGKISIRSEQHPITFIIIIQKLNCALFAINA*(+)
MAARRVDAVLLTDANGLLSGIVTDKDIAKRVIAEGLRVEQTITSKIMTRTPVYVMSDTLAIEAL
QKMVQGKFRHLPVVENGEVIAMLDIAKCLYDAISRLEKAAEQGSALAAAVEGVERQVGDNLPDH
SSVIETLRERMLKPSLSTIISENTKVAIVSPWDPVCVAARKMHELRVNSVVITAGNSLQGIFTS
KDVLMRVVTQNLSPELTHVEKVMTAHPECATLDTSILDALHIMRDGKFLHIPVVDGEGRVVACL
DVLQITHAAISMVEGGPETTNGVANTIMQKFWDSALALEPPDEEFDSRSEISLLMPSEAGDGRS
SINPPVVGNSFVFKIEDQKGRMHRFACGSESLHELVSSVVQRLGIDGEKGTVQLLYDDDEGDRV
LLTTDTDLTGAVLHAKSSGLKRGEDGEEAAADEGGDDPGGDDGGGGLPADGGEEGGRRAAHGRQ
RITLRHRHR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017