Plant Circular RNA Database

Detail information of AT2G36530_circ_g.8

			
						 General Information
					
						CircRNA Name
						AT2G36530_circ_g.8
					
						ID in PlantcircBase
						ath_circ_016829
					
						Alias
						Chr2:15321678|15322600
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 15321678-15322600  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						CIRCexplorer; CIRI
					
						Parent gene
						
							AT2G36530						
					
						Parent gene annotation
						
							LOS2
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT2G36530_circ_g.1 AT2G36530_circ_g.2 AT2G36530_circ_g.3 AT2G36530_circ_g.4 AT2G36530_circ_g.5 AT2G36530_circ_g.6 AT2G36530_circ_g.7 AT2G36530_circ_g.9 AT2G36530_circ_g.10 AT2G36530_circ_g.11 AT2G36530_circ_g.12 AT2G36530_circ_g.13 AT2G36530_circ_g.14 AT2G36530_circ_g.15 AT2G36530_circ_g.16 AT2G36530_circ_g.17 AT2G36530_circ_g.18 AT2G36530_circ_g.19 AT2G36530_circ_g.20 AT2G36530_circ_g.21 AT2G36530_circ_g.22 AT2G36530_circ_g.23 AT2G36530_circ_g.24 AT2G36530_circ_g.25 AT2G36530_circ_g.26 AT2G36530_circ_g.27 AT2G36530_circ_g.28 AT2G36530_circ_g.29 						
					
						Support reads
						3
					
						Tissues
						seedling
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G36530.1:4
AT2G36530.2:4

General Information
CircRNA Name	AT2G36530_circ_g.8
ID in PlantcircBase	ath_circ_016829
Alias	Chr2:15321678\|15322600
Organism	Arabidpsis thaliana
Position	chr2: 15321678-15322600 JBrowse»
Reference genome	TAIR10.38
Type	ei-circRNA
Identification method	CIRCexplorer; CIRI
Parent gene	AT2G36530
Parent gene annotation	LOS2
Parent gene strand	-
Alternative splicing	AT2G36530_circ_g.1 AT2G36530_circ_g.2 AT2G36530_circ_g.3 AT2G36530_circ_g.4 AT2G36530_circ_g.5 AT2G36530_circ_g.6 AT2G36530_circ_g.7 AT2G36530_circ_g.9 AT2G36530_circ_g.10 AT2G36530_circ_g.11 AT2G36530_circ_g.12 AT2G36530_circ_g.13 AT2G36530_circ_g.14 AT2G36530_circ_g.15 AT2G36530_circ_g.16 AT2G36530_circ_g.17 AT2G36530_circ_g.18 AT2G36530_circ_g.19 AT2G36530_circ_g.20 AT2G36530_circ_g.21 AT2G36530_circ_g.22 AT2G36530_circ_g.23 AT2G36530_circ_g.24 AT2G36530_circ_g.25 AT2G36530_circ_g.26 AT2G36530_circ_g.27 AT2G36530_circ_g.28 AT2G36530_circ_g.29
Support reads	3
Tissues	seedling
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G36530.1:4 AT2G36530.2:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GCATAGCAAGCTTGTTTCCGGCATGGGATCCACCATTGATGACGTTGAAGGCAGGAACTGGTAG
CACAATCTTGGGGTTACCAGCAAGGTTGGCAATGTGccttggggttagtgaccaacaaatcatc
accgacaatctgaacctcggttccacactcagtggtcatcttagcatagtgctcccagtcatct
tggtcaaa

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CCTTGGGGTTAGTGACCAACAAATCATCACCGACAATCTGAACCTCGGTTCCACACTCAGTGGT
CATCTTAGCATAGTGCTCCCAGTCATCTTGGTCAAATGGGTCCTCAATGGACACGATTGGGTAC
TCAGCGACAAAGGACTTGTACAGGTCCTTTAGAGCATCACCAGAAATCTTCTGAGAGCCATTGT
TGTTCTGCAGAGAAACAAAGAGCGCAACAGCTACAAGTTAAGAACAGGTTTCTCACACTCTATC
CTGACAAGCTGTTACTAAGGAAAAAGAAATTTCACCTCTTCTTTGAAGTTCAAGTCGTAGGTCT
TGTCTTCTGAGTAGAACTCTGAAGCGGCAACATCCATTCCAATGACAACCTGGAAAAAATTGAA
TGGGATCCATTAGTTTCATGAATTATGTTTCGGGTAAAAGGACAGCCAAATTACATCAGATAAG
AGACAGACCTTTCCAGTGTATCCAGCCTTCTCGATAGCAGTCTTGAGCAATTCAAGACCCTCCT
TGTTCTCCTGAATGTTTGGTGCAAACCCACCTTCATCACCAACATTTGTGGCATCCTGGCCGTA
CTTCTTCTTAATCACAGACTGGAAAAACATATGAGAACAAGATGGTTAAGCCATAAACATGTAA
TACATGTTAGTTCACAGGAACCATCTGCGAAAAAGTAATACATGTATATGGAATATTCATTGAA
GAGCATCTCAAAGACCAAAAAATATTGGAGATTTACCTTCAAGTGGTGGTAAACTTCCACACCC
ATCTTCATGGCTTCCTTGAAAGAAGCAGCTCCAACAGGGAGGATCATAAACTCCTGCATAGCAA
GCTTGTTTCCGGCATGGGATCCACCATTGATGACGTTGAAGGCAGGAACTGGTAGCACAATCTT
GGGGTTACCAGCAAGGTTGGCAATGTG

Sequences
Splice junction sequence	GCATAGCAAGCTTGTTTCCGGCATGGGATCCACCATTGATGACGTTGAAGGCAGGAACTGGTAG CACAATCTTGGGGTTACCAGCAAGGTTGGCAATGTGccttggggttagtgaccaacaaatcatc accgacaatctgaacctcggttccacactcagtggtcatcttagcatagtgctcccagtcatct tggtcaaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCTTGGGGTTAGTGACCAACAAATCATCACCGACAATCTGAACCTCGGTTCCACACTCAGTGGT CATCTTAGCATAGTGCTCCCAGTCATCTTGGTCAAATGGGTCCTCAATGGACACGATTGGGTAC TCAGCGACAAAGGACTTGTACAGGTCCTTTAGAGCATCACCAGAAATCTTCTGAGAGCCATTGT TGTTCTGCAGAGAAACAAAGAGCGCAACAGCTACAAGTTAAGAACAGGTTTCTCACACTCTATC CTGACAAGCTGTTACTAAGGAAAAAGAAATTTCACCTCTTCTTTGAAGTTCAAGTCGTAGGTCT TGTCTTCTGAGTAGAACTCTGAAGCGGCAACATCCATTCCAATGACAACCTGGAAAAAATTGAA TGGGATCCATTAGTTTCATGAATTATGTTTCGGGTAAAAGGACAGCCAAATTACATCAGATAAG AGACAGACCTTTCCAGTGTATCCAGCCTTCTCGATAGCAGTCTTGAGCAATTCAAGACCCTCCT TGTTCTCCTGAATGTTTGGTGCAAACCCACCTTCATCACCAACATTTGTGGCATCCTGGCCGTA CTTCTTCTTAATCACAGACTGGAAAAACATATGAGAACAAGATGGTTAAGCCATAAACATGTAA TACATGTTAGTTCACAGGAACCATCTGCGAAAAAGTAATACATGTATATGGAATATTCATTGAA GAGCATCTCAAAGACCAAAAAATATTGGAGATTTACCTTCAAGTGGTGGTAAACTTCCACACCC ATCTTCATGGCTTCCTTGAAAGAAGCAGCTCCAACAGGGAGGATCATAAACTCCTGCATAGCAA GCTTGTTTCCGGCATGGGATCCACCATTGATGACGTTGAAGGCAGGAACTGGTAGCACAATCTT GGGGTTACCAGCAAGGTTGGCAATGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.333465905

Conservation Information
Conserved circRNAs	NA
PMCS	0.333465905

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to methyl jasmonate

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to methyl jasmonate

			
						 Other Information
					
						References
						Zhang et al., 2020

circRNA

Detail information of AT2G36530_circ_g.8

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