Plant Circular RNA Database

Detail information of BGIOSGA023352_circ_ig.2

			
						 General Information
					
						CircRNA Name
						BGIOSGA023352_circ_ig.2
					
						ID in PlantcircBase
						osi_circ_016460
					
						Alias
						Chr06:26789755_26789984(MH63RS2)
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr6: 27449695-27449921  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							BGIOSGA023352_circ_ig.1 BGIOSGA023352_circ_ig.3 						
					
						Support reads
						NA
					
						Tissues
						root, leaf, panicle
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	BGIOSGA023352_circ_ig.2
ID in PlantcircBase	osi_circ_016460
Alias	Chr06:26789755_26789984(MH63RS2)
Organism	Oryza sativa ssp. indica
Position	chr6: 27449695-27449921 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	ig-circRNA
Identification method	CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	BGIOSGA023352_circ_ig.1 BGIOSGA023352_circ_ig.3
Support reads	NA
Tissues	root, leaf, panicle
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CCCAGAGCTTTCGCACAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGAGCCATCTGTA
GCAATGCCGACCCAGGCCCGCAGCCCGTACCGCAACggatgcgagacccaagcgggccagcagt
gcggcggcccgttatccttccaccgttggaagcgggcagtattcgctgctctgtgaaaccagcc
tcacgcca

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GGATGCGAGACCCAAGCGGGCCAGCAGTGCGGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGG
CAGTATTCGCTGCTCTGTGAAACCAGCCTCACGCCATGCCTGCCACTCTAGGAACCGTGGGGCC
CCAGAGCTTTCGCACAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGAGCCATCTGTAG
CAATGCCGACCCAGGCCCGCAGCCCGTACCGCAAC

Sequences
Splice junction sequence	CCCAGAGCTTTCGCACAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGAGCCATCTGTA GCAATGCCGACCCAGGCCCGCAGCCCGTACCGCAACggatgcgagacccaagcgggccagcagt gcggcggcccgttatccttccaccgttggaagcgggcagtattcgctgctctgtgaaaccagcc tcacgcca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGATGCGAGACCCAAGCGGGCCAGCAGTGCGGCGGCCCGTTATCCTTCCACCGTTGGAAGCGGG CAGTATTCGCTGCTCTGTGAAACCAGCCTCACGCCATGCCTGCCACTCTAGGAACCGTGGGGCC CCAGAGCTTTCGCACAAGCCCCGCCGGCCCACTACTCAACTTGGAACGGGCGAGCCATCTGTAG CAATGCCGACCCAGGCCCGCAGCCCGTACCGCAAC

			
				
						 Conservation Information
					

				
						Conserved circRNAs
						
							osa_circ_031551 osa_circ_031553 osa_circ_031557 osa_circ_031526 
osa_circ_031516 osa_circ_031554 osa_circ_031525 osa_circ_031540 
osa_circ_031560 osa_circ_031524 osa_circ_031527 osa_circ_031510 
osa_circ_031507 osa_circ_031505 osa_circ_021502 osa_circ_031547 
osa_circ_031546 osa_circ_031528 osa_circ_031529 osa_circ_031539 
osa_circ_021511 osa_circ_021512 osa_circ_031517 osa_circ_021515 
osa_circ_021507 osa_circ_031559 osa_circ_021513 osa_circ_031518 
osa_circ_021516 osa_circ_021509 osa_circ_031515 osa_circ_031541 
osa_circ_021521 osa_circ_031530 osa_circ_021520 osa_circ_031571 
osa_circ_021501 osa_circ_021506 osa_circ_021503 osa_circ_031574 
osa_circ_021526 osa_circ_021505 osa_circ_021504 osa_circ_031523 
osa_circ_031572 osa_circ_021525 osa_circ_021524 osa_circ_031538 
osa_circ_031502 osa_circ_031504 osa_circ_021529 osa_circ_021527 
osa_circ_021489 osa_circ_021530 osa_circ_021494 osa_circ_021461 
osa_circ_021500 osa_circ_021485 osa_circ_021468 osa_circ_021495 
osa_circ_021449 osa_circ_021499 osa_circ_021481 osa_circ_021477 
osa_circ_021467 osa_circ_021498 						
					

						PMCS
						
					

			
		

Conservation Information
Conserved circRNAs	osa_circ_031551 osa_circ_031553 osa_circ_031557 osa_circ_031526 osa_circ_031516 osa_circ_031554 osa_circ_031525 osa_circ_031540 osa_circ_031560 osa_circ_031524 osa_circ_031527 osa_circ_031510 osa_circ_031507 osa_circ_031505 osa_circ_021502 osa_circ_031547 osa_circ_031546 osa_circ_031528 osa_circ_031529 osa_circ_031539 osa_circ_021511 osa_circ_021512 osa_circ_031517 osa_circ_021515 osa_circ_021507 osa_circ_031559 osa_circ_021513 osa_circ_031518 osa_circ_021516 osa_circ_021509 osa_circ_031515 osa_circ_031541 osa_circ_021521 osa_circ_031530 osa_circ_021520 osa_circ_031571 osa_circ_021501 osa_circ_021506 osa_circ_021503 osa_circ_031574 osa_circ_021526 osa_circ_021505 osa_circ_021504 osa_circ_031523 osa_circ_031572 osa_circ_021525 osa_circ_021524 osa_circ_031538 osa_circ_031502 osa_circ_031504 osa_circ_021529 osa_circ_021527 osa_circ_021489 osa_circ_021530 osa_circ_021494 osa_circ_021461 osa_circ_021500 osa_circ_021485 osa_circ_021468 osa_circ_021495 osa_circ_021449 osa_circ_021499 osa_circ_021481 osa_circ_021477 osa_circ_021467 osa_circ_021498
PMCS

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhou et al., 2021

circRNA

Detail information of BGIOSGA023352_circ_ig.2

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