Detail information of Os08g0323000_circ_igg.4


General Information
CircRNA Name Os08g0323000_circ_igg.4
ID in PlantcircBase osa_circ_036719
Alias Os08circ06706/Os_ciR265
Organism Oryza sativa
Position chr8: 14113159-14114776  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 16/144/4
Tissues leaf and panicle/root/seed
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTGTTGACTCTGTTATATTCCTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGAC
TTGTATAACCTTCTGAGACGTGCGGTACAGTATCTCctcaatcttagccttgaaaagatcataa
gcaggcccctccttttccagatctagtagttcatgtgcttgcaaagctgatccgcctagtttgc
gagagcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 134
Transcript exons: 14113159-14113191,14114676-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGTGACTGTTGACTCTGTTATATTCCTCTTGGT
ATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTGCGGTACAG
TATCTC

Transcript length: 142
Transcript exons: 14113159-14113203,14114680-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCTGTTGACTCTGTTATATTC
CTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTG
CGGTACAGTATCTC

Transcript length: 182
Transcript exons: 14113159-14113251,14114688-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGCTGTTATATTCCTCTTGGTATATTTACCACGGCCA
TGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTGCGGTACAGTATCTC

Transcript length: 192
Transcript exons: 14113159-14113290,14114717-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTGCGGTACAGTATCTC

Transcript length: 194
Transcript exons: 14113159-14113328,14114753-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGATTTTCTATACTCCCATATTCTGAGACGTGCGGTACAGTATC
TC

Transcript length: 199
Transcript exons: 14113159-14113276,14114696-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCTTCCTCTTGG
TATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTGCGGTACA
GTATCTC

Transcript length: 203
Transcript exons: 14113159-14113288,14114704-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGGGTATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTGCGG
TACAGTATCTC

Transcript length: 208
Transcript exons: 14113159-14113283,14114694-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTTAT
TCCTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACG
TGCGGTACAGTATCTC

Transcript length: 223
Transcript exons: 14113159-14113321,14114717-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGATTTTCTATACTCCGGCCATGCAGAAACTTGAGAGACTTGTA
TAACCTTCTGAGACGTGCGGTACAGTATCTC

Transcript length: 229
Transcript exons: 14113159-14113308,14114698-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGCCTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGA
CTTGTATAACCTTCTGAGACGTGCGGTACAGTATCTC

Transcript length: 270
Transcript exons: 14113159-14113334,14114683-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGATTTTCTATACTCCCATATTTCCCAATGACTCTGTTATATTC
CTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGACGTG
CGGTACAGTATCTC

Transcript length: 285
Transcript exons: 14113159-14113332,14114666-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGATTTTCTATACTCCCATATTTCCCCTCACATCTGTGACTGTT
GACTCTGTTATATTCCTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATA
ACCTTCTGAGACGTGCGGTACAGTATCTC

Transcript length: 294
Transcript exons: 14113159-14113341,14114666-14114776
CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGATTTTCTATACTCCCATATTTCCCAAGCTCCTCCTCACATCT
GTGACTGTTGACTCTGTTATATTCCTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAG
ACTTGTATAACCTTCTGAGACGTGCGGTACAGTATCTC

Genomic sequence CTCAATCTTAGCCTTGAAAAGATCATAAGCAGGCCCCTCCTTTTCCAGATCTAGTAGTTCATGT
GCTTGCAAAGCTGATCCGCCTAGTTTGCGAGAGCAAAATCCAATCATAGGTTCCACTTCCTCAA
TGCGCTGACGGCATAAAAGTTGATTTTCTATACTCCCATATTTCCCAAGCTCCTCATATACAGC
CCTGTGATAAAACAATACATCACTCAGCCATCAATGATCTCCCAACAATTATAATGCAAAGAAG
ATTTAGCAGTGGCGCTGATTATCAAATATGTACAAACAACAAGGAGAACAATTATGGAAAAATA
TATGCAAGAAATAATGGCCAAACTTCTAGAACCTAACCTGGTGTTCTTGAAATTTGTCATTGCT
GCCTCTATGTTCTTCTCTTGCTCAAACAGCAAGGTACCTTTCATGTATGAAGCATATGCCTGCA
AAACAATTTTATCAAAGAAATTATTTAATGTTAGTATTGTAAGGGTTATTTTCTCATATGGCAA
TATCACCTTAAAATTTCTTGATTTGAGTTTTCTCAAAAAAAAAAAAAAGGGGGTATGAAACACA
CCTCAGCTTCCAAAGACGTCCTGGAATCTCCTTTTAGAGAACATAAATGTGAAAAAAGCGTTGC
CCATTTGACAGCTTTTCTAAATCTACCTAACATGTAGATACGCTGTTGTGCATTTGGACCAGCA
GTTTTCTTTTCCATCGCATGACTCCATGCTCTCTCAGCCATATAAAATACTATGTGTAGAAACC
TGCTCTCATATGTTGAAATTACTTCAGAATGTAATGATGCAATAAATGTCTAAAAACTACACAA
ATTCAACTGTAATGCTCAATGCCATTGTACTTCTTGATGAAGTCATTAAAAAAAATGATGTGAC
ATACATATATGGCGATAATAATAAATACTTTTGCTGGGTGATGGGAATAGCCTGCCAAGGAACA
ATCAGAGGCATCATATGCAATTACCAAACAAGGAGTGCAAACATTTAGCAAACAATAACTATGA
AGCAAGATTACACTGAGCTCATCACTATGCGTTTATGACAGGGCACCAAACGGTTTTAATCATC
CTCAATAACCACCCAATTTCACCTTCTTTTGTGGTGCTGCCATGGTGGTGGTGTCTCTATGCGT
GTGCTCTGGTTTTCACTAAGGAAAAATGATGGATATAGGAACTTAAGACTGTCATAGGACTCCA
ACCCAATTATCCTAGACACCCAGGAGGTTAACAACTTCTACCACCAGGTCACTGGTCTGTTTCC
CTACTATTGCTCTTAGCAGCTTAAGTAAGATAGCAGTCCCAAATTGGTTCACTAAATAGTTTAG
GTGGAGCAATATCCTGAGATCTAGATGGCAAGAAGGCATCATGCTATGAAGTATGAAATGGTAA
CTTCTTTCAACTTTGAAAATGGGAAGACAACACCCGGATATTGAAGTATGAACAGAGACACCAA
GCTATATAACAGATTATCAGCAGAAAGCATCACACCTCACATCTGTGACTGTTGACTCTGTTAT
ATTCCTCTTGGTATATTTACCACGGCCATGCAGAAACTTGAGAGACTTGTATAACCTTCTGAGA
CGTGCGGTACAGTATCTC
Conservation Information
Conserved circRNAs osi_circ_007670* osi_circ_017787
PMCS 0.450492692
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA