Detail information of Zm00001d028075_circ_g.1


General Information
CircRNA Name Zm00001d028075_circ_g.1
ID in PlantcircBase zma_circ_006427
Alias Zm01circ00037
Organism Zea mays
Position chr1: 22065843-22069247  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2
Parent gene Zm00001d028075
Parent gene annotation BTB/POZ domain-containing protein NPY2
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, endosperm
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d028075_T010:6
Zm00001d028075_T037:5
Zm00001d028075_T040:5
Zm00001d028075_T035:6
Zm00001d028075_T009:5
Zm00001d028075_T011:6
Zm00001d028075_T039:6
Zm00001d028075_T036:6
Zm00001d028075_T038:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGCAAGGAAATGCATAAGTACCCCAAAATCGCGAGTAATATGGGCAACTCCTCGTTGGTTCC
ATTGTACACAGATAGCTCTTCCACCATCCACAACCTttcaccaccttcttgctggctccatttt
gaattgcagccaggtattttagcttcatcactcttctgtttttcaagaagctgtgtacctctct
ttgccttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 370
Transcript exons: 22065843-22065981,22067924-22067967,22068685-22068722,22
068858-22068929,22069171-22069247
TTCACCACCTTCTTGCTGGCTCCATTTTGAATTGCAGCCAGGTATTTTAGCTTCATCACTCTTC
TGTTTTTCAAGAAGCTGTGTACCTCTCTTTGCCTTCACTTCTACACCCTTCAGATATTTCGTAG
GATTTCCTTCACTCACTACTTGATAAACCCTGTAAAGAATCAGTCAGACCATCACCTGTAAAAT
TTCCAGAAACAAATGCTCGTGATGCATCCCTCCCAGCAAAGTGATGATAACCTCCTCCAGGACC
ATAATGTGACCTCCCTTTCGTGACATCAAACACTGAGCCCAAAATCGCGAGTAATATGGGCAAC
TCCTCGTTGGTTCCATTGTACACAGATAGCTCTTCCACCATCCACAACCT

Genomic sequence TTCACCACCTTCTTGCTGGCTCCATTTTGAATTGCAGCCAGGTATTTTAGCTTCATCACTCTTC
TGTTTTTCAAGAAGCTGTGTACCTCTCTTTGCCTTCACTTCTACACCCTTCAGATATTTCGTAG
GATTTCCTTCACTGTCGTAGTAACGTCCAATAAGTTTACCAGCAAATCTGTATCGTACATGTAA
AGGAATGTTACGAGGGTATATATCATTAATAGAGTAGTTTCTCTAACATGATCTGCTACTTCCA
TGATAGCTTAGTGTGTTCCATATGGCATACACATTTGGTACTAACATAAATAACACATAGCAGT
AATGGATTTGGAAACATGAACAAGAGAATCTAGAGCAAGTGCTCTAGCATGAACACATAAACAG
TGTTCCAAACCGTGCTTCACTAGACTGTCTCGGTGCCACCCAGCTGCATACAGTTTTATGAAAC
TTCATGGTTTACAGATATGGAAGGAAACAAGTAACATGAAGACCATGAAGATGGCTCTTAGACA
GGAGCTCACATGTATCTTTCGAAGTAAAATTTCCTCCAATCAACTACGCTGTTTACCTGACAAA
ATTGAAAATCCATCATATCGAAAATATTGGCAGAATAAAGAGAGAAAGTAAAGTCTGTAAATGC
TTTTATTCTACACTAGCATGCACATATAGTGTTATGTTCAATGTGCTAAGTAGCTGCTTCCCAC
CAGTATTTATTATTTAATATAATATACATACGTGAATGATAAGCTGAGAAGGAGTAAATAGAAA
GCTAGAGTTATGGCGTCAGACCCTAGAGTCAAAAGGATTTAGAATTAGCAGGACCAAAACTGAG
TATATGAGATATGACTTTAGTACTACAATTAGTGAGGATGGAGATGTAAGCTTGGGAGGCCAGG
TAGTACCAAAGAAGGACACCTTCTGTTGTTTGGGATCGATGCTACAGAGAGAGAAAGATATTGA
TGAAGATGTTAGCCATAGAATCAAAGCGGGGTGGATGGAATGACGTCAAGCATCGGGAATCCTA
TGCGACAAGAGAGAAAGATATTGATGAAGATGTTAGCCATAGAATCAAAGCGGGGTGGATGGAA
TGACGTCAAGCATCGGGAATCCTATGCGACAAGAGAGTGTCACAGAAGTTGAAAGGCAAGTTCT
ACAGGACAACGATTAGGCTTGCTATGTTATATGAGGATGAGTGTTGGCCTACTAAGAGACGACA
TATCCAACAACTAAGTGTCGCAGAGATGCGTATGTTGCGTTGGATATGTGGGTACACAAGATTG
GGCCGAGTAAGAAACGATGACATACGCGATCAGCTAGGAGTAGCGCCAATTAAAGAAAAGCTAA
TTCAACACCGGTTGAGATGGTTTTGGCATGTCACCGGAGACCCTAGAGGCACCGATGCATAGAG
ACATCATAAGACGGGACAATAATGTGAATAGAGGTAGAGGTCGACCAATCTTGACATGGGAGGA
GGCAATCAAAAGAGACTTGAAGGAATGGAATATCCCAATGAAGTTGTGTTTGGATAGAAGTGCT
TGGAAAGAAGTTATCGACGTGCCCGAACCATGATTATGTCCTTTTCCTTTTAGTGCTCTCAAAA
GCTTTTCCCCTCTCTTTTCTCTCTCTCTTTTTGGTGACATCTTGCTGGGTTTCAACTCTAGCCT
ACCCTAACTTGCTTAGGACTAAAAGACTATGTTGATGTTGATACATACGTGAATGATACATGAG
GCGACGATGTTACAGTTTTAAGTTTTAACATAATTATTTGAGCTCCTAGCATGTGCACACCTAT
ATCCATAGAGGCTAGAAGCACAAGAGAACAAAGATTAAATTGGAACTAACTCTTTTGTAAGAAA
AAGGTTAGTACCATAAGCAAGTAAACAGCAACTAGATTTTTCTGAAGTGGTTAGAGATGGAGAC
AAAAGAGTTTATATTACAGTTGAAGCTAACTGCCATCCTAGCCCTAATTTATTAATCATGTTTT
AAACATTTTTCACTGGTTGTCTATGTCTAAGCTTCAGATTCGCATTAACTACAAGGTTTACTAA
TACGAATAATCCATACATAGTGTGTTTTAGTACCTCACTACTTGATAAACCCTGTAAAGAATCA
GTCAGACCATCACCTGTTGAAACAGAAAGGTTATTCTAGCAAAAGAATATACTTAAGCAGTAAT
AGACCATTCTTCTTTTTCCTTAGAATAGAGCTGTCATGCTTAACGACCATTATCTTTTTCTTAT
GGTAAAGTTATTTTTAAAAAACAACTTTAGTAGAAGCAGACAAGCTAGATTAGCTTCCACAAAG
TTTTATAAGGGGGTAATTACTCTCTCATTCCAAATTATAGGTTGTTCTAACTTTTCTAGATACA
TAGATGTCACCTAGATATATATAATGTCTAGATACATAGTAAATCTAGAAAAGCCAGAACAACT
TGCAGTTGTTGTTGATGTTGATGATCTTATAAAGGCCTAGTCATAATATCTGCATTTTATTCAT
TGATCCAAACCCTTCTTCATTAAACCAATAGGCAACTTTTTTCACTATCTTTATACCGCTTCTC
ATAGTGTGAAGAGTCAGCAATAACAGATTCTAAGAATTGAGCAGGAGTGTTCATTATATGTCTT
GATCGTTACATCATTTATCACTTATGAAATTTGAATTTAGTATCAATGTGCTGCTTGGAGTAAA
AAGATCACGCACAAGAATGCTTTGGCCTTTGCAGTTCAAGCCATAAATTCAAGATCAGGGGGAC
ATCAAAATTATCTCTATAGAACCAACATCAACTAATGGTCATTTAAATGATTTACTAAGCTAAA
TAGCTAGCAGTAAGAAGCAGACTTACCTGTAAAATTTCCAGAAACAAATGCTCGTGATGCATCC
CTGTCAAAAGAATGATGTTTTAACATCAGCAATGTGAAACCTATCCTCCTAGATTTATTATAAC
ACCAAGCTGCGACATACATGTAATTCATAACAATGAAACTGAAACAGGCGCTAGAAATCTAAGA
CTGTAACCTCCCAGCAAAGTGATGATAACCTCCTCCAGGACCATAATGTGACCTCCCTTTCGTG
ACATCAAACACTGAGCTGCAGCATCAAATGAAAACCAAGATCATTCACACAAAGTCACAAACCA
AGCCAGTACGACAATAGACTGGAATTTACTGAAAACATCAACTGTATTAAAAAGGTGTGCTATG
CGTTTGAGTTTTAACTTATTTATCATATCAAGCTTCCCTTTTCTCACGGTAATTAAGTATCATA
CTATTAAAACAAGTCAGAGGGGAAGAAAATGTTGGCATATGAAGGCAAGGAAATGCATAAGTAC
CCCAAAATCGCGAGTAATATGGGCAACTCCTCGTTGGTTCCATTGTACACAGATAGCTCTTCCA
CCATCCACAACCT
Conservation Information
Conserved circRNAs NA
PMCS 0.074210061
Functional Information
Coding potential Y
Potential coding position 22069190-22065987(+)
22069240-22065845(-)
22065900-22067958(-)
Potential amino acid sequence MGNSSLVPLYTDSSSTIHNLSPPSCWLHFELQPGILASSLFCFSRSCVPLFAFTSTPFRYFVGF
PSLS*(+)
MVEELSVYNGTNEELPILLAILGSVFDVTKGRSHYGPGGGYHHFAGRDASRAFVSGNFTGDGLT
DSLQGLSSSEVNSVVDWRKFYFERYIFAGKLIGRYYDSEGNPTKYLKGVEVKAKRGTQLLEKQK
SDEAKIPGCNSKWSQQEGGERLWMVEELSVYNGTNEELPILLAILGSVFDVTKGRSHYGPGGGY
HHFAGRDASRAFVSGNFTGDGLTDSLQGLSSSEVNSVVDWRKFYFERYIFAGKLIGRYYDSEGN
PTKYLKGVEVKAKRGTQLLEKQKSDEAKIPGCNSKWSQQEGGERLWMVEELSVYNGTNEELPIL
LAILGSVFDVTKGRSHYGPGGGYHHFAGRDASRAFVSGNFTGDGLTDSLQGLSSSEVNSVVDWR
KFYFERYIFAGKLIGRYYDSEGNPTKYLKGVEVKAKRGTQLLEKQKSDEAKIPGCNSKWSQQEG
GERLWMVEELSVYNGTNEELPILLAILGSVFDVTKGRSHYGPGGGYHHFAGRDASRAFVSGNFT
GDGLTDSLQGLSSSEVNSVVDWRKFYFERYIFAGKLIGRYYDSEGNPTKYLKGVEVKAKRGTQL
LEKQKSDEAKIPGCNSKWSQQEGGE(-)
MKLKYLAAIQNGASKKVVKGCGWWKSYLCTMEPTRSCPYYSRFWAQCLMSRKGGHIMVLEEVII
TLLGGMHHEHLFLEILQVMV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020