Detail information of AT1G49430_circ_g.7


General Information
CircRNA Name AT1G49430_circ_g.7
ID in PlantcircBase ath_circ_006467
Alias Ath_circ_FC2768
Organism Arabidpsis thaliana
Position chr1: 18293074-18295104  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene AT1G49430
Parent gene annotation Long chain acyl-CoA synthetase 2
Parent gene strand +
Alternative splicing AT1G49430_circ_g.1 AT1G49430_circ_g.2 AT1G49430_circ_g.3 AT1G49430_circ_g.4 AT1G49430_circ_g.5 AT1G49430_circ_g.6 AT1G49430_circ_g.8 AT1G49430_circ_g.9
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G49430.2:6
AT1G49430.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTACCAATCTCCCAATGATTTCGAATCTCTATGTCAAAATCTCAAAGCTCAAAAATACTTC
TTGGATGAGCTTAACTCTACCGCAAAGCAATATCAAtgtgacacgagcgatgtgttcttctcgt
acttgccattagcacattgctatgatcaagtcatggagatttactttttatctagaggctcctc
tgttggat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1035
Transcript exons: 18293074-18293184,18293273-18293360,18293451-18293517,18
293601-18293676,18293839-18293956,18294037-18294285,1829
4683-18294822,18294919-18295104
TGTGACACGAGCGATGTGTTCTTCTCGTACTTGCCATTAGCACATTGCTATGATCAAGTCATGG
AGATTTACTTTTTATCTAGAGGCTCCTCTGTTGGATACTGGCGTGGCGACATTCGGTACCTGAT
GGATGATGTTCAAGCTCTTAAACCTACTGTGTTTTGCGGTGTTCCACGAGTTTACGACAAACTA
TATGCCGGTATAATGCAAAAAATATCAGCTAGTGGCTTGATACGCAAGAAACTGTTTGATTTTG
CTTATAACTACAAATTGGGAAATATGAGAAAAGGATTCTCTCAAGAAGAAGCTTCTCCTCGTCT
AGACAGACTTATGTTCGATAAGATAAAAGAAGCATTAGGAGGAAGAGCTCATATGTTGTTATCA
GGAGCAGCGCCTCTACCTCGTCATGTAGAGGAGTTCTTGAGAATCATTCCTGCCTCTAATCTCT
CTCAAGGTTATGGATTGACTGAGAGTTGTGGGGGAAGCTTCACGACCTTAGCCGGAGTATTTTC
TATGGTGGGGACAGTGGGTGTGCCAATGCCCACGGTGGAGGCAAGGCTAGTGTCCGTACCAGAG
ATGGGTTACGACGCCTTTTCCGCTGACGTGCCGAGAGGAGAGATTTGTCTTAGAGGAAATTCAA
TGTTTTCTGGTTACCATAAAAGACAAGATCTAACTGATCAAGTCCTAATCGATGGATGGTTCCA
CACAGGAGATATTGGAGAATGGCAAGAAGATGGATCAATGAAGATCATCGATAGGAAGAAGAAC
ATCTTCAAGTTGTCTCAAGGTGAATATGTTGCTGTTGAAAACCTCGAAAACACTTACTCAAGAT
GTCCCCTCATTGCTCAGATATGGGTCTATGGCAACAGCTTCGAGTCATTTTTGGTAGGTGTGGT
TGTACCTGATAGAAAAGCTATTGAAGATTGGGCTAAACTCAATTACCAATCTCCCAATGATTTC
GAATCTCTATGTCAAAATCTCAAAGCTCAAAAATACTTCTTGGATGAGCTTAACTCTACCGCAA
AGCAATATCAA

Genomic sequence TGTGACACGAGCGATGTGTTCTTCTCGTACTTGCCATTAGCACATTGCTATGATCAAGTCATGG
AGATTTACTTTTTATCTAGAGGCTCCTCTGTTGGATACTGGCGTGGCGTAAGCAAAATTTTCTC
TTAATTTTGAATCCTTTTTTCCCACAAAATGCCCATTATATTTTCTGATTTTTTTTTTAAATTT
GAGACAGGACATTCGGTACCTGATGGATGATGTTCAAGCTCTTAAACCTACTGTGTTTTGCGGT
GTTCCACGAGTTTACGACAAACTATATGCCGGTATAATACTTTTGATCAAGTCGAAAATTCGAG
TTTACCCTCATTTTATTCAAGTTTTACTGAATTTTCTTCTATTTTATATGGCTGCAGGTATAAT
GCAAAAAATATCAGCTAGTGGCTTGATACGCAAGAAACTGTTTGATTTTGCTTATAACTAGTAC
GTTTTCTATGTTTCTCCAAATTATTATAAAGAAAAACACGGATCTTGGAATTATCTTTAAAATC
ATCTTGTGAATACAGCAAATTGGGAAATATGAGAAAAGGATTCTCTCAAGAAGAAGCTTCTCCT
CGTCTAGACAGACTTATGTTCGATAAGGTTAGTGTATTTATCTATGATGTAGAAATAAAAATTA
TTAAATTTTGTAGTCACTGATTACAATAAATGTTATGATCTTCTCCTAGCCTTCTCAAATGGAA
GATAAGATGGAAATAACATGTAATATAGACTTACAGTTTCAGAAAATTTAAATTGTGACAGATA
AAAGAAGCATTAGGAGGAAGAGCTCATATGTTGTTATCAGGAGCAGCGCCTCTACCTCGTCATG
TAGAGGAGTTCTTGAGAATCATTCCTGCCTCTAATCTCTCTCAAGGTTATGGTAAGTGTACCTA
AACCGAATTTCGAGTCATACACCGATCTCTTGGTTTGGGCTAAGCCGATTCTAATGAAATGTGA
CAGGATTGACTGAGAGTTGTGGGGGAAGCTTCACGACCTTAGCCGGAGTATTTTCTATGGTGGG
GACAGTGGGTGTGCCAATGCCCACGGTGGAGGCAAGGCTAGTGTCCGTACCAGAGATGGGTTAC
GACGCCTTTTCCGCTGACGTGCCGAGAGGAGAGATTTGTCTTAGAGGAAATTCAATGTTTTCTG
GTTACCATAAAAGACAAGATCTAACTGATCAAGTCCTAATCGATGGATGGTTCCACACAGGTAT
TGTTGTTGATCCAACTAGTTATGGAGTAGATAAAAATTGGAAAAATGTTTTGAATGTTTAAATG
TATATCCAACTAGTTATGTGTAGGTAAAAATTGGAAAAATGTTGATCTAGATGAAGCAGAACGG
ATCATGAATATCACATAAATCGAATATATCCGCTTTGCATTAACTTTTAGTTGTAACAAATAAT
ATGATTGAAAAGCAAGTGATAGTAATTGGTAGAAGAGTGGCTGGTTTTTCCACTCGTATGTCTC
GAATGGTTATTTTGAAATTTACTTAAAATGGATATGTAGACTCTAAAACTTAGTCTATATTTTA
ACCATTAGATTGTTAGTTACAAAAGCAACTTGTATTGGATAATGTTGAAATTTGATTTCATTTA
TATGAGTAGGAGATATTGGAGAATGGCAAGAAGATGGATCAATGAAGATCATCGATAGGAAGAA
GAACATCTTCAAGTTGTCTCAAGGTGAATATGTTGCTGTTGAAAACCTCGAAAACACTTACTCA
AGATGTCCCCTCATTGCTCAGGTATGTAATTATTAAAATTATGTTTTCAATACTATAATCATAG
TAATTGAATAATTGTTATCTAATAATTGTACTATCTACCAATAATTGTGACAGATATGGGTCTA
TGGCAACAGCTTCGAGTCATTTTTGGTAGGTGTGGTTGTACCTGATAGAAAAGCTATTGAAGAT
TGGGCTAAACTCAATTACCAATCTCCCAATGATTTCGAATCTCTATGTCAAAATCTCAAAGCTC
AAAAATACTTCTTGGATGAGCTTAACTCTACCGCAAAGCAATATCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.183981261
Functional Information
Coding potential Y
Potential coding position 18293134-18295101(+)
Potential amino acid sequence MEIYFLSRGSSVGYWRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFD
FAYNYKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASN
LSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGN
SMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYS
RCPLIAQIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNST
AKQYQCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDDVQALKPTVFCGVPR
VYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRA
HMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARL
VSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQEDGSMKII
DRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQ
SPNDFESLCQNLKAQKYFLDELNSTAKQYQCDTSDVFFSYLPLAHCYDQVMEIYFLSRGSSVGY
WRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQKISASGLIRKKLFDFAYNYKLGNMRKGF
SQEEASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHVEEFLRIIPASNLSQGYGLTESCGGS
FTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSADVPRGEICLRGNSMFSGYHKRQDLTD
QVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIAQIWVYGNS
FESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKAQKYFLDELNSTAKQYQCDTSDVFFS
YLPLAHCYDQVMEIYFLSRGSSVGYWRGDIRYLMDDVQALKPTVFCGVPRVYDKLYAGIMQKIS
ASGLIRKKLFDFAYNYKLGNMRKGFSQEEASPRLDRLMFDKIKEALGGRAHMLLSGAAPLPRHV
EEFLRIIPASNLSQGYGLTESCGGSFTTLAGVFSMVGTVGVPMPTVEARLVSVPEMGYDAFSAD
VPRGEICLRGNSMFSGYHKRQDLTDQVLIDGWFHTGDIGEWQEDGSMKIIDRKKNIFKLSQGEY
VAVENLENTYSRCPLIAQIWVYGNSFESFLVGVVVPDRKAIEDWAKLNYQSPNDFESLCQNLKA
QKYFLDELNSTAKQYQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a