Detail information of Os05g0480000_circ_g.3


General Information
CircRNA Name Os05g0480000_circ_g.3
ID in PlantcircBase osa_circ_042140
Alias NA
Organism Oryza sativa
Position chr5: 23599041-23599126  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0480000
Parent gene annotation Serine/threonine protein kinase, Photosystem II (PSII) repair, P
hosphorylation of PSII core protein (Os05t0480000-01);Similar to
STN8 (Os05t0480000-02)
Parent gene strand +
Alternative splicing Os05g0480000_circ_g.1 Os05g0480000_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0480000-02:1
Os05t0480000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGTGGGGACGGCGGGGGCGAAGGAGTGCGGCGACTACGAGGActggacgagaggtacaaggag
aaggtgatactgaagaagatca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 86
Transcript exons: 23599041-23599126
CTGGACGAGAGGTACAAGGAGAAGGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGA
AGGAGTGCGGCGACTACGAGGA

Genomic sequence CTGGACGAGAGGTACAAGGAGAAGGTGATACTGAAGAAGATCAAGGTGGGGACGGCGGGGGCGA
AGGAGTGCGGCGACTACGAGGA
Conservation Information
Conserved circRNAs NA
PMCS 0.18314186
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study