Detail information of Zm00001d032867_circ_g.2


General Information
CircRNA Name Zm00001d032867_circ_g.2
ID in PlantcircBase zma_circ_006829
Alias zma_circ_0000448, GRMZM2G003724_C1
Organism Zea mays
Position chr1: 240870323-240873311  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ, CIRI2
Parent gene Zm00001d032867
Parent gene annotation Phosphoglycerate kinase
Parent gene strand +
Alternative splicing Zm00001d032867_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d032867_T001:5
Zm00001d032867_T002:4
Zm00001d032867_T003:4
Zm00001d032867_T005:3
Zm00001d032867_T004:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAGATTCCTCACCGCAATATACAGAATTTCAAAAGTCCACTGTTGTTTGGGAATTCCTCAAA
GGAAGGATATTGCCTGGTATAGCAGCATTGGATAAAagtacatgtcatcccttcttcaagtaga
agtcatcccagtagatggtgcacctagttcaacatcatttaagcaagaagagtgggctcagaac
agtattat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 950
Transcript exons: 240870323-240870666,240871443-240871728,240872557-240872
624,240873060-240873311
AGTACATGTCATCCCTTCTTCAAGTAGAAGTCATCCCAGTAGATGGTGCACCTAGTTCAACATC
ATTTAAGCAAGAAGAGTGGGCTCAGAACAGTATTATTTTGTTTGAAAATCTTCTGAACTTCACA
GGAGAAGTTGCTAATTGCAAAGATTTTTCTCAGAAGCTTGCTTCAGGTGCCATGATATTTGTCA
ATGATTCTTTCTCACTGTCTCATAAGATTCTTGCATCAACTGTTGGGATCACGTGCTTCTGCTA
TGCGTCTCTTGCTGGTTTCCATTTTGAAGAGGAGCTTATGAAATTGATAAAGATCACGGACTCC
ACGAGGCGCCCATATATTGCCATTATTGGAGGCAGTAATTTCTTGAGAAAAGCACCTGCTCTTC
AGACGTTAACCTGTCTATGCGATGGGTTGTTCTTTGTTGGAAAATTATCATTTCAAATAATGAA
TGGTTTTGGAATGACAGTGCCCTCTCAATTCATAGAAAGAAATGCAGTTAAGGAAGTACTACAA
ATTATTCAAGTTGCTAGGGATAGGAATATTCCTATTTATTATCCAACAGATCTCTGGTGCTTGA
AAAATGGCGACAGTGAAATATCAGGGGTCATCAACTCTACCGGACAATTGGCTGGCTGGACACC
AGCTGATATAGGACCATCGACATTGGAGAAGATTTCTTCTATAATTACATCATACAAGAAGATA
CTGTGGATTGGCCCTACAAACTACGGTTTGACAGAAAAAAATTCAGTTGGTGGAACACAGTTGG
GTGAAATACTGGAAAGTGCAAGCTCTGATGGCTGTGATGTTATTTTAGTGGGGGATGCAGCATG
CAAGGCAGTAAAAAGAAAAACAGATTCCTCACCGCAATATACAGAATTTCAAAAGTCCACTGTT
GTTTGGGAATTCCTCAAAGGAAGGATATTGCCTGGTATAGCAGCATTGGATAAA

Genomic sequence AGTACATGTCATCCCTTCTTCAAGTAGAAGTCATCCCAGTAGATGGTGCACCTAGTTCAACATC
ATTTAAGCAAGAAGAGTGGGCTCAGAACAGTATTATTTTGTTTGAAAATCTTCTGAACTTCACA
GGAGAAGTTGCTAATTGCAAAGATTTTTCTCAGAAGCTTGCTTCAGGTGCCATGATATTTGTCA
ATGATTCTTTCTCACTGTCTCATAAGATTCTTGCATCAACTGTTGGGATCACGTGCTTCTGCTA
TGCGTCTCTTGCTGGTTTCCATTTTGAAGAGGAGCTTATGAAATTGATAAAGATCACGGACTCC
ACGAGGCGCCCATATATTGCCATTGTAATCATTAACCTATTTTTTCCCGATGTATATGTAGCTG
ACAGTCTTTATTCAAGATCTAGCTATCAAAAAGCAGTTGCCTATTGTTTTTTAATGAAATATGT
TGCAGCTTTACTTCCAGTATTCTATCAATGTCTGTAAAGTATGCTAATTCAGGCTGTAAAGATG
AATGACTTATTAAGAACAACCAAAATTTCATTTTCTTATCCTTCACATATCATAAGTCTCTGGA
ATTAGACAACAAGTACTACTAATGTGCGACCCCCACTGTGTACTTATATAGAGTAGAATTTCCC
TGAGGCTCTGTGAAGTACCCAATTAGCCAGAAGTATTGTATACTGGTGTTGTTTTTCTTTTAAG
TGAGTGAATGCCACTTTAGGCATTATAGCGTAGTTCATATGCTAATAAGATAATAGCATTCTTT
TTCTTAAGTTTTTGTTAGAAAGACCGATGCTATGAAATGGTATAATACATTTTTTCCTTCTGCA
TTCTCAAGCTCATCTGCTAATGGGTAAAAAATAGCTAAATAAGTAAATATCCTCCGCTGTCACT
TTCAGTTATGCTGGAGATTTATTCACCTGAAAACAATTGATTACTGATTACAGTAGATGAATAA
TGGCAATTAAAAAAAGCCGTCCTAGCAGCTTGTGCTCCATATGAAGCATGTGCAACTAGAGGAT
CCATATGTCACTACGAAGTACCATTTATAGCCAAAATCATGTAATCGCCTCCTATTTCCTGGAT
TCTTTATTTCTGATTCCTTCTGGTTATTGCAGATTGGAGGCAGTAATTTCTTGAGAAAAGCACC
TGCTCTTCAGACGTTAACCTGTCTATGCGATGGGTTGTTCTTTGTTGGAAAATTATCATTTCAA
ATAATGAATGGTTTTGGAATGACAGTGCCCTCTCAATTCATAGAAAGAAATGCAGTTAAGGAAG
TACTACAAATTATTCAAGTTGCTAGGGATAGGAATATTCCTATTTATTATCCAACAGATCTCTG
GTGCTTGAAAAATGGCGACAGTGAAATATCAGGGGTCATCAACTCTACCGGACAATTGGCTGGT
GAGAATTACTAGCAACTTTTCATGTCATTCACATATCTCAACTAACTTTCCTCTTGTAACATCT
CTGAAATTGTGCTTCCCTTTAGTTTAGGACACCCGGTTTGCAAAACTACCTGTCAAAGTATATA
TACTAGTAAAAGTGGAGCTCTATTGCATGCTGGCAAATTACACCATGCAGAAACATGCTGAATT
GGATAGTTTGCAGCAACATGTTTATAATACTGACTTCTAGGAACTGAGCCTAATGCAATTTCCT
TTTTCTTTATCTCTCTCTCTCCCTCCCTCTAAAAAAAATGAGCTACCAGTTGCCAAAGGGAGTA
AGGGATCTGCATTTTGCAATGAGTTAAATGCATCGGTAGCCCCTGAACTTGTCAAGGAATGTCA
CTTAGATCCATAAACTTTAAAAATGCATTTTTAGATCCTTAAACTTGTTAAGTGATATACCTCA
CATCCCTAAACTTGTAAAAATGGTGCATCACAGGTCTATTTCTGAACCATACCGACTACTGCAG
TGTGCCATTTAACAAGTTCAATGACCTAGAAATGCATTTTCAAAGTTTGTAGATCTAAGAGGCA
CCACTTGATAAATTTAGGGACCGTTCATGCATTTAACTCCTTTTTGCAATTTATAGATCTGCAT
GTGTCTCAGTGAGTCAGTGTCTGTAGAGTTTTTTCCATCTGCAAATTCTAGCATTTCCATTGCC
CTTTAGCCATTTATTAAAAACACCTCAAGGGGTGATTGTGTTAAGAGTTGAAGTTGGAAGGGGC
AGATAAACAATTACTTGAAGCAGTTCTAATACCTGTGATTTTTCAACACTTTGTTTAGGCTGGA
CACCAGCTGATATAGGACCATCGACATTGGAGAAGATTTCTTCTATAATTACATCATACAAGGT
AAGAAAATGGTATTACGGGAAACGTTGTTTCAGTTAGTTTCTGGGTTTTGTGCAATCGTCGTAA
TTAGTTTTTACTTAAAAGCATTAGTTATTTCATATTTTTTTTTGCTTCTCGTGTAACTGCAATA
TTTTTGTCAGTAATGAACTATGTGGTGTAAGGGAAATATTCAAGATAAAAAATATATCCAGATT
AATTTGAAGGCTTCATTTTGATCGATGTGATAATTTGTGCTTGTGAACTGCCATGGATTGGATT
TCACCTTCATTCCTTTCTTTTTGTGAGAACCCAAGCTATGGAATTGGCATGCAATTGGACCTTT
TATCTTCCCTATTAATCAATGACATGCAGTTCTCTTATGTTTTTGTTTGAGAAATAACCATAAT
CTTTTGCAGCCTGGACAACTTATGACATTTTTACATTTTTTTTGTACAGAAGATACTGTGGATT
GGCCCTACAAACTACGGTTTGACAGAAAAAAATTCAGTTGGTGGAACACAGTTGGGTGAAATAC
TGGAAAGTGCAAGCTCTGATGGCTGTGATGTTATTTTAGTGGGGGATGCAGCATGCAAGGCAGT
AAAAAGAAAAACAGATTCCTCACCGCAATATACAGAATTTCAAAAGTCCACTGTTGTTTGGGAA
TTCCTCAAAGGAAGGATATTGCCTGGTATAGCAGCATTGGATAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.073789308
Functional Information
Coding potential Y
Potential coding position 240870329-240870346(+)
240870336-240873224(-)
Potential amino acid sequence MSSLLQVEVIPVDGAPSSTSFKQEEWAQNSIILFENLLNFTGEVANCKDFSQKLASGAMIFVND
SFSLSHKILASTVGITCFCYASLAGFHFEEELMKLIKITDSTRRPYIAIIGGSNFLRKAPALQT
LTCLCDGLFFVGKLSFQIMNGFGMTVPSQFIERNAVKEVLQIIQVARDRNIPIYYPTDLWCLKN
GDSEISGVINSTGQLAGWTPADIGPSTLEKISSIITSYKKILWIGPTNYGLTEKNSVGGTQLGE
ILESASSDGCDVILVGDAACKAVKRKTDSSPQYTEFQKSTVVWEFLKGRILPGIAALDKSTCHP
FFK*(+)
MTCTFIQCCYTRQYPSFEEFPNNSGLLKFCILR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Ma et al., 2021b;Zhang et al., 2019