Detail information of AT2G05710_circ_g.2


General Information
CircRNA Name AT2G05710_circ_g.2
ID in PlantcircBase ath_circ_012888
Alias 2:2141970-2142190
Organism Arabidpsis thaliana
Position chr2: 2141970-2142190  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05710
Parent gene annotation Aconitate hydratase 3, mitochondrial
Parent gene strand +
Alternative splicing AT2G05710_circ_g.3
Support reads 2
Tissues flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05710.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGAATGAGTTTATGAAGGACCTGAGAATCTGAAGAGGAGTGTTGTATTTGCAGATAAACTTC
CTTACTCTATTAGGATTCTGCTTGAATCTGCGATTCagcatccgtttaaagggatcttcactac
acttcctaagcctggtggtggtgaattcggaaagttctatagcttacctgctcttaacgatcca
cgagttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCATCCGTTTAAAGGGATCTTCACTACACTTCCTAAGCCTGGTGGTGGTGAATTCGGAAAGTT
CTATAGCTTACCTGCTCTTAACGATCCACGAGTTGGTATGGATTTTTTGAATCTCTCTTTGAAT
GAGTTTATGAAGGACCTGAGAATCTGAAGAGGAGTGTTGTATTTGCAGATAAACTTCCTTACTC
TATTAGGATTCTGCTTGAATCTGCGATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.228993366
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020