Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08930_circ_g.3 |
ID in PlantcircBase | ath_circ_001503 |
Alias | At_ciR1872 |
Organism | Arabidpsis thaliana |
Position | chr1: 2874096-2875060 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, find_circ |
Parent gene | AT1G08930 |
Parent gene annotation |
ERD6 |
Parent gene strand | + |
Alternative splicing | AT1G08930_circ_g.1 AT1G08930_circ_g.2 AT1G08930_circ_g.4 AT1G08930_circ_g.5 AT1G08930_circ_g.6 AT1G08930_circ_g.7 AT1G08930_circ_g.8 |
Support reads | 5/4 |
Tissues | leaf/whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08930.2:6 AT1G08930.1:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.137397936 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2874102-2875057(+) |
Potential amino acid sequence |
MFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGV GIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFC LFFIPESPRWLYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAM WLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFIIGNFIPWRLLT VVGLVPCVFHVFCLFFIPESPRWLYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCI TGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLF FIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWLYSMFGSILTLGGLIGAVFSGKVADVLG RKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVF ANQLMQNCGISLFFIIGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRWL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |