Detail information of Os05g0405000_circ_g.14


General Information
CircRNA Name Os05g0405000_circ_g.14
ID in PlantcircBase osa_circ_042103
Alias NA
Organism Oryza sativa
Position chr5: 19725966-19726071  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0405000
Parent gene annotation Orthophosphate dikinase precursor (EC 2.7.9.1). (Os05t0405000-01
);Similar to Isoform 2 of Pyruvate, phosphate dikinase 1, chloro
plastic. (Os05t0405000-02)
Parent gene strand -
Alternative splicing Os05g0405000_circ_g.5 Os05g0405000_circ_g.6 Os05g0405000_circ_g.7 Os05g0405000_circ_g.8 Os05g0405000_circ_g.9 Os05g0405000_circ_g.10 Os05g0405000_circ_g.11 Os05g0405000_circ_g.12 Os05g0405000_circ_g.13 Os05g0405000_circ_g.15 Os05g0405000_circ_g.16
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0405000-02:1
Os05t0405000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGCCCCGCCGGCAGCGTCTTCCCCGCCGCCTGGTACTGCTGGCACGCCTCCgcgcgccgcca
tgtactcctccacccactggagcccctcgacgatctcctccc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 106
Transcript exons: 19725966-19726071
GCGCGCCGCCATGTACTCCTCCACCCACTGGAGCCCCTCGACGATCTCCTCCCACAGCCCCGCC
GGCAGCGTCTTCCCCGCCGCCTGGTACTGCTGGCACGCCTCC

Genomic sequence GCGCGCCGCCATGTACTCCTCCACCCACTGGAGCCCCTCGACGATCTCCTCCCACAGCCCCGCC
GGCAGCGTCTTCCCCGCCGCCTGGTACTGCTGGCACGCCTCC
Conservation Information
Conserved circRNAs NA
PMCS 0.296602044
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study