Detail information of BGIOSGA011985_circ_g.1


General Information
CircRNA Name BGIOSGA011985_circ_g.1
ID in PlantcircBase osi_circ_013951
Alias Chr03:4221633_4224456(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 4677385-4680207  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA011985
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   GT-AA
Number of exons covered BGIOSGA011985-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCAAGTTTACCCGGTTCGCATGCATGAAATTTCTTCGATTTCACTTGTTACTTACAGTTTGTA
ATCAGTTTGATGCATTATGGTACTAGCTGGTGATTTggtaatactacttacttaattccatgct
taatcacgtatacacatattcggtagttcatcggagtagattagtattatattactagtattat
gtttaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATACTACTTACTTAATTCCATGCTTAATCACGTATACACATATTCGGTAGTTCATCGGAG
TAGATTAGTATTATATTACTAGTATTATGTTTAAATGAAAGCATATTATGCCAATGTGTGAAGC
TCCTAGGATCTATGATTTGTTACTGCGCAAGAAACTTGTTCGTTCTAACATTTCAGATCTCACG
TAAATTGAATCGGCCAAGGTTTTATTCTGAAACAACAAAAACATATTTCTGGTGCAAAAGGATA
GATCGGATAAAACATATATATTGACGTTATACAAAGTGCTCAAGGACTAAATGAAGGTCTCATA
TGGAGCTAGCATAGGATCGAATTTCATGATTCATGGAATCCACATGGTCCTTCAGTGATCTAGC
CAACTGTTTTTCAAACAGCGCCATTTTTTTTTTTGAGACGAATCAAACAAGGCAAATTAAAACT
GCAAATATACTTTTGGATTTACCGGACGTAGTAGCTGAAATCTCAAAACCGTGAAAGCTATTCA
AGGTGACGTGTGAAGAGAAAACTCTTGGAACGTGTAAGCCTCAGACCTCCTTTAATGGTTGAGC
TAGTGCACTAGCTCATGCTTGCTCACCTTATACAAGAGATAGAAAAAGTCTATCTCTCCAATAG
ATTGTTTCATAACACATTATTTAAAATGCTTTGGGTTTCACAATTCCTCTCACATTTTCTTTAG
GAGCTTAGCTCTTAAAGAAGAGATAGTGCATTCTCTCTCCTTATCTCCTCTCTCTTCCACATCA
TAAGCTGATGTGGAGATTTATGAGCTAGCTGACTCACCCTTGTTGGAGGAGGTCTTAGTATTAA
CTGCTGGATGAACTTGCATTGACAGCAACAAAAAAAAAACTCATAATCAGTTGGGCTTTTAGTT
GTGAATAACTATTGGTATAGTGGTGTCTATAGCTAGTACTACTCCGCATGGTCCTTTAATACGG
TCATAATCCTTGCCAGCTACTACCAACTCAAATGCTTTTAATGTAGCACACATTCACTATTTGA
GCACTGACAAATCTGCCCGGCACTGACTGAAATACCCGAGCCACGCTCATACGATTACCACCTC
CATTTTACTTGACAGCCCTAGATAGAACCGGTGTGATTCGTCTTTTTTTTCCTGAGATTTCACC
ACATTGGCATATTTGAAATCATCTAGAATTAAATTTTTAGAAATTATATCATTAGATCCATCAA
AAAAAAAATACTTCCATACTTAGTATCCGCTTGTTATTACTCCCTCCGTTTCAGGTTATAAAAT
ATTTTAACTTTGGTCAAAGTCAAACTTTCAAGTTTGACCAAGTTTATAGAAAAAAATAGTAATA
TTTTCGACTGAAGATAAATTTATTATAAAAATATATTTAATTATTAATTTAATAAAACTAATTT
GGTAATGTAAATATTATCATATTTGTCTATAAACTTAGTTAAATTTGAAGCAGTTTGACTTTGA
CTAAAGTCAAAACATCTTATAACATGAAACTAAGGGATTATATCCTAACACAACGTTGTAAAAT
GTGCAATGGTCAAAGCAATATCTTAGAAATTGCAAAAAAAAAAAAGAAGAACGGAGGTAGTGCT
ATTTTGTATGAATCAAATTCATTTATCATATATTGATTCTACACCTAATAAGTATACACTAGAT
AGATGCTTTTCCTTGTGCCCGAGTGCCTCTGTTATTTTGTACTGTATGTCACTTTTAGTATAAA
TACTGCCACCATTCTCAAGTAAACAGTCTTTGACCACTGCTTTTTTTCCCTGATTACTCTATGT
TGACTAAAGGAATGGTAATAAAATATTAACTGAATATTATAAAGTATTTACATGATATATTAGA
TCCAAAATTGATAAGAAGCTCCTCCTTAGTAGATACTCCAAAAGAAACTCTAGTTATATCTTTG
CAGACTTAGGCCTGGTTTAGTTCTCCAAATTTTTTTCTCTAAAGCATAACATCGAATCTTTGGA
CATATGCATGGAGTATTAAATATAAATTACAAAAACTAATTGCACAGTTAGGGGGGAAATCACG
AGACGAATCTTTTGAGCCTAATTAGTCCATTATTAGCCATATGTGCTACAGTAATCCACATGTG
CTAATGACGGATTAATTAGGCTCAAAAGATTTGTCTCGCGGTTTCCAAACGAGTTATGAAATTA
TTTTTTCATTCGTATCCGAAAACCCCTTCGACATCCGGTGAAATATCTGATATGACATATAAAA
AATTTCTTTTCACGAAACCGCGTTATGAAATTAGTTTTTTCATTCGTATTTGAAAACCCCTTTC
GACATCCGGTAAAATATCTGATGTGACATATAAAAATTTTCTTTTCACGAACTAAACAGACCCT
TATATGCTACACATCACTAAGTTTTGGAAAACAGTTTGTTGGCTACCATTATTTTGTTGGAGTC
TTGAATGCAAGTTAGGAGGCACCTTTGGTTGGGCCCCAGTCCTTGGAAGTGAATGGGCAGGGCA
GGGTCGAAGTTATGACGAGCTGGTAGGATGCTTTCGGTTATGGCCAGGCCAGCCGGTGACTCGA
TCAGTCGATCGCTCTCACTTGCTCGTGTCATCAAATACGGTTGGGCGATTGGGCACACACATTC
AATGAGCCGAACCGTATTATTAAACCGTAAATGTTTTGCGTGAGCACACAAACCACAACCTGCA
CTATCCTTGCATGCACGATGGATTTGAGTCAAACAACCAAGTTTACCCGGTTCGCATGCATGAA
ATTTCTTCGATTTCACTTGTTACTTACAGTTTGTAATCAGTTTGATGCATTATGGTACTAGCTG
GTGATTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021