Detail information of Os06g0156900_circ_g.1


General Information
CircRNA Name Os06g0156900_circ_g.1
ID in PlantcircBase osa_circ_029747
Alias NA
Organism Oryza sativa
Position chr6: 2903678-2906439  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os06g0156900
Parent gene annotation Glycosyl transferase, family 31 protein. (Os06t0156900-01)
Parent gene strand +
Alternative splicing Os06g0156900_circ_g.2 Os06g0156900_circ_g.3
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   CA-TA
Number of exons covered Os06t0156900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGATGCTTGCTATGAACGTCAACCATGAGAACACACATGCACTTTGTTCACCTGAGTGCACAG
AGTCTTCAATTGCTGTTTGGGATATTCCAAAATGTTcagattggaggaagcaactggtctggca
ttcagatttgtgattggaaaaagtaatgacaagtctaagatggcagctttagaaagagaggttc
aagaatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTGGAGGAAGCAACTGGTCTGGCATTCAGATTTGTGATTGGAAAAAGTAATGACAAGTCT
AAGATGGCAGCTTTAGAAAGAGAGGTTCAAGAATACGATGATTTCGTGCTTTTAGATCTGGAGG
AGGAGTATAGCAAGCTTCCGTACAAAACGTAAATAGCAGAACTATTATCATATGCTTTTGTTAT
TTCTTCAGAAAGATGCTGATTTATTCTTATGTTGTAGGTTAGCTTACTTTAAGGCTGCGTATGC
ATTGTATGACTCTGACTTCTATGTTAAAGCTGATGATGATATCTACTTGAGACCAGGTGCATAC
CAATGCCCTACATATCCTCTTACAGATTTTGACTTGGATATCATATTTTTTTTAATGGCTGGCA
CTTTCATTACTGATATCTATTCTGCAGATAGACTTTCATTGCTTTTGGCTAAGGAGCGTTCACA
TACACAAACATACATTGGATGCATGAAGAAGGGGCCTGTTTTTACTGACCCAAAGCTGAAATGG
TCAGTTCTGTTATTTAGTCTTGTATGACATAATGAACCCCTTTTATGCCATATTGTTTTTTTTA
TTGAGAAAGTTTAACTCTATGAAGAAATGCATACAGCATCGTGGCTCATGCTAAGCAAATGTAA
ATTAGATAATAAAGAAATTTTTTCGTCCAGATGCGACCCTCACACCTCCACAAAAAAGTTAATA
ATTTTATGGTGTCAAAAAATATTTCATCACTGTATAAATATGAACTGAAAATAACTCAGTTTCA
GATTCGTAATTACGTGTTTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCTATAT
TCATATTGATGTTAATGAATCTAGATAGATATAGATGTCTATATTCATTAACATCAATATGAAT
GCGGAATATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATGTTATATTGTACAAAACCA
GAACTGCTGGTACCTCAATATCCGGATGGTTTCTCATAAAGTTAAGCACAGACCACACTAGATA
TGGTGTGTAAAGCAAGCACTTGATCTGTAGGGTTGGAAGGCGAAGGAAAGGATTAGCAAGGAAC
GTGTTTACTTGATTGTTTTTCAGATGTTAATGCGCATGTATCCCAAACTAGATGAATACTCCGT
CGCGTTGCTGCGGAAAATTAAGTTGCATAATATGTACAAATAAGATGTAATTTGATTATCAAAA
CTAAAACAATTTGATACAATTTTGAGCCTAAAAATAATTGAGATTGCATGTTTTTAAGAGAGAA
GAAAGAAGAGACAATTTGGATTATAGATCTATCATCCAAAGGCTAGAAATAATTGGGGTGATGT
GGCTTAATGAGAGGAGAGAAATAGCATTAACTACACTTAGTGGGGATGAACTATGTAAGTATAA
AGGATTCCTGAATCCTAACGACTTTTGTCAGGTTCAACATCTTATCAGTATTATTCGAGGATCA
AAGAAAATCATATATATCCTTCATCAGTTTTGTATTTTGTCACACGCTCCACCCTCCAATTCAC
CAGTGCAGCTGTCATTTTTGAATCTGTGCTTAAAATATTGCTAGCTTAGCTGTGCAAGCACTCT
TGTGATCCTACAAGTTGGTGCAAGCACAAAGTGTTCAGTTTGTGAGTCTATTCCCTCCAACGTG
ATTTTCAGTTTCCTCTTTGCTATTATAGTTTTAAGACAGTTGTTAGCTTAGCTTTTAGGGTAGT
ATAGACAGAATTCTATAACCAAGGCATGTTGCTGTGGCAAATGGTGTGAGGGCATATATGCTGA
GTATACCACATGCTGTTTGGACTTCAGACTTTCTATTGTTCCACACAGCAAAAATATTCCATGT
ACCATTCATCAATGACTGCTTATCATATTGTTTCTGCTCTTTTTCCAAATGCAGGTATGAGCCA
CAATCCTTTTTGCTCGGATCAGAATACTTCCTTCATGCATATGGGCCTATTTACGCTTTATCAG
CCGATGTGGTGGCAAGCTTGGTTGCCTTGAGGAACAACAGGTAATTAACAGTACTCATCCTATC
TTATTGTGAAGCAGCATTCTTCAACTTGCCTTCTCAAACCAGTTAGCCTATGAAATAGTATTCA
ATGTTGGTTTGGGTCTATGGTTTCCCTGCTTTGATGGCCAGTGATGGTGAGGCCACCGCTCACT
GTATGACTAACATGAGCAACACTACTGCACTGCAAATCCATATACTTCTGTAAAGAAGTTGTAT
TGACTGTTACTGCTGTCTTACTGGCTTTCATATTAGCCTTGTTCCCACAATTCTGAGCTATTCT
TGGTAGTTTTAGCCCTCTCATGTAAAAGAAGTGGTGTTTCTTTTCAGCAAAACTTTCCCTTTTC
TGGCTCAACAAATTAAGAGCGAAGGGAAATAGTGTGTGGTTATTGATTAATTGCTCACGATATA
TTAAACTCAGAAGCCCTGGAGCCTAAAGTAAACATACTACATGGTTATGTCATGGGCTTCAGCA
GTAGAAGTTTCGTACATAAGACTGTTGTTGCATTCATGTTTTTCATTTTGCATCACTGTTAAAC
TTCATCCACGATCGAGTCACGTTATATGTTTGTTTAATGGATTCTCACATATGTTTCTCCAGTT
TCCGTATGTTCAGCAATGAGGATGTTACTATTGGATCCTGGATGCTTGCTATGAACGTCAACCA
TGAGAACACACATGCACTTTGTTCACCTGAGTGCACAGAGTCTTCAATTGCTGTTTGGGATATT
CCAAAATGTT
Conservation Information
Conserved circRNAs osi_circ_016687
PMCS 0.472001761
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1425-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017