Detail information of Os09g0475400_circ_g.2


General Information
CircRNA Name Os09g0475400_circ_g.2
ID in PlantcircBase osa_circ_039559
Alias Os_ciR11847
Organism Oryza sativa
Position chr9: 18208624-18212111  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os09g0475400
Parent gene annotation Helix-loop-helix DNA-binding domain containing protein. (Os09t04
75400-01);Similar to cDNA clone:J023084K14, full insert sequence
. (Os09t0475400-02)
Parent gene strand +
Alternative splicing Os09g0475400_circ_g.1 Os09g0475400_circ_g.3 Os09g0475400_circ_g.4 Os09g0475400_circ_g.5 Os09g0475400_circ_g.6 Os09g0475400_circ_g.7 Os09g0475400_circ_g.8 Os09g0475400_circ_g.9 Os09g0475400_circ_g.10
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0475400-02:3
Os09t0475400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGGAGCTGCAGTGGAAGTGGTACTGATCAGCGGCCCAGCTCACCACGTTCAAAGCACTCTGC
TACCGAGCAGCGTCGGCGCAGCAAGATCAATGACAGgtttcttcctgaggacgcacgacttcct
gcagccgctggagaagccgacgccggcgccgacgccgcctccgacgagccagctgcagcagcag
cagcagca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTCTTCCTGAGGACGCACGACTTCCTGCAGCCGCTGGAGAAGCCGACGCCGGCGCCGACGCC
GCCTCCGACGAGCCAGCTGCAGCAGCAGCAGCAGCAAGCGTTCCCCGGCGGCATCGGAACGTTC
AGCATCAGCCACGTCGCCGGCGCACGCCCGGTCGCGGCTGCCGTCGTCAAGGCCGAGCCGACGC
CGTTCGTTCTCTGGGGCCAGCCCGCCGCCGCCGCCGCCGCGCACCCGGTCGCCGCACTAGGTAC
GCACATACATACACTCGTCTACAGCGAATACCTGCGGCGCCGCGCGCGCGCGCGCGCACGCCGC
CGCGGTAGCTAGTGGACGCCGCTCTCGCGTTCGCGTTTGCCTTTTCCGGTCGCCGACGTTGACG
CTCGCGGGGGCACACGCGCTGCGCGGTGCGCGAGCGCATCGCCTTTTCTCCTCTCCTTACCGCG
GTCGCTTTCGCGGCATCACACTCGCGCGCGCGTGCGCGTGAGACCGAGGGAGAAAGGTGGAGGA
GGGCCGAGGGGGAGGGGACAAGCTGGGCCTCGATCGGTGGGCCGGGCGATCAGAAGTTTGGGCC
GGAAAATGGGGCCCATGTTGTCCGTGCAAAACTGAGCCTTCGTCTAGTCGTCACGCGTCCCACC
ACGTGAACGCCAGGTGCTTAGCCGCCGGACGCGGCCCACCACCGGTGGCCGCCACCGCGGCTAC
GGCCACACGCGCGTCTCCACGTAGAGCACCACTATCCCACTGACATGTGGGCCAGTGGGCATTT
TCTCTGCTGCCTTAGACAAAAGCTAAAGGCGAGCACTTTGTCATTGTGTGTACTCCTCCACTGT
GCAGGGCACCACCACCACCACCACCAGTGGACGCTCCCCTTCGCCGGCGTCGGGCAGGTGGCCG
CCACCGCGGCGAGGCAGCAGCAGGAGTGGAAGGGGCGAGTCGGGGGAGGCGGGTTCATGGACTC
TGGCTCCAGATCCAGTGGCGGCGCCGGGTTCGACGACGACGATGGCGTGGCCGCGCGGCGTGAG
GTCTCGTCCTCGCTCAAAGGTACCCCAATTCCGTTCAATTCCGCTCGGTTTCGCGAGAAATTTT
GTTGTTCTGGGTTGCTGGCCGCGTCGATGGTGGAGAATCCGCGGGTTTTGCGGGGTTTTGGCAT
CGTTTTCCCCCAATTTTTTGGCCTGTGTTTTATGCGAGAAGCAGAGAAATGCCCCGTTGTTGGT
GCTCACGAGGTAGTGTTTGTGTAGCAGAGAGGAGGAGGGAGGGTAGGGGGGAAGAAGGGAGGAG
GAGGTCGCGTGAGCTCATGGAGATGGAGATGGAGATGTACTCGCGGTGCGCGCGGCCATCCCAC
ATCCACCAGCTGCATGCGCGCCTCGTGGTCTCCGGCCGCCTCCGCTGCACCTCGCCGTCGCTCG
CGCTCGCGCTGCTCCGCGCCGCGTGCCGCGTGCGCGCGTCGCCGTGCCTGCGTCCCCTCGCCCA
CCACCTGCTCGACCATATCCCGCGCCCGCACCCGCATCTGCTCCACGCGGCCGCTCGCCTCGCG
TACCGTCTGCGCCTGCCTTCCCTCGCGCTCCGCCACTATGTCGCCCTCCGCACGCACCACCCGG
TGTTCCTCCCTCCCGCAGCGGCCATCGCGGACATGCTCAAGTCTGTCCGTGGCCGCGCCGCGCA
TGCCCACGCGCTACGCGTCACCGCCCACGCAGGGGACACTAGGTTCCTGGATAACACACTTGTC
GCGATGTACTTTGCCTGTGGAGATGTCCAGCGCGCACGGCTTGTGTTTGAGGGAATGTGTGACC
GGGATGTCATCTCATGGACATCGCTAATCTCAGGACTAGTGCAAAATGGCAGCCCCTTGCAAGG
TATACAGCAGTTTGCAACGATGATGCACTGTGATGTACGCCCTGACTTTGTGGTGCTAGTGACC
GTCGCCAAGGCGTTCATGGAGCTTGATAACCTGCCAGGTGCTGAATCAGCTCATTCCTTAGTTG
TCAAGGGCGGTTTCCATGATGAACAAGATGTGATGATCACATTGACAGCCATGTATGCCAGCTT
TGGGTGCTTAGTAGCTGCGAGGGCGCTTTTTGACATGGTCCCACCCCAGCAGGTGAATGTGATC
CTGTGGAATGCCATGATATCAGGTTACTCCAAGAATGGATTTGCCAGTGAGGCAGTGCATTTAT
ACAAGCATATGCAGCTGGTTGCTAGGAACTTGGCTCCCGATTCTATCACTTTGCGATCAGTAAT
ATTTGCATGTGCTCAGCTTGGCTCCACTGAGCTTGCGGCATGGATGGAGGATTGTGTATGCCGC
AGTGAGTACAGGGAGGATGTGCTTGTGAACACAGCTTTGATTGACATGTATGCCAAATCAGGGA
GCATCTCTCATGCACGTGCAGTCTTTGAACGGATGCATGTGGATGACCGTGATGTGGTAGTCTG
GAGTGCTTTAATCACGGGTTATGGTGTGCAAGGCCTTGTCAATGAGGCTTGCACTTTGTTTCAG
GACATGAAGCTTGCTGGAGTAAGACCAAATGACGTGACATTCCTTGGACTTCTATCAGCATGCA
ACCATGCAGGTGCTGTTGAGAAAGGATGGAGCTACTTTCACTCTATGAAACCTGACTATGGAAT
TGAGCCCCAGCACCAGCACTATGCTTGCGTGGTAGACCTGCTTTCTCGTGCTGGACAGCTTGAT
AGAGCCTACCAATTTATACTGAATATGCCCATCAAACCAGAGATGACTGTCTGGGGCGCTTTAC
TCCATGGTTGCAAGATGCACGGGCACTCAAACATGGCCATGGCTGAATGCGCAGCACAGCACAT
TTTTGAGTTGGAGCAGTCCAATGCAGGGCACTATGTTCAGCTTGCAAACATGTATGCATCTGCA
GGGATGTGGAGCCAAGTCGCTGGCATGCGAGTCACCATGAGAGAGAGGGGTGTCACCAAGGCAA
CGGGGTTTAGCTTCATCGAGGTTGATGGAGAGATGCACTCATTCCATGCTTGGGATCACTCGCA
CCCGAGGGCCACCGAGATATTCGCCATGCTGTGCCTTCTTTCTCCAACTCCAACCGGAGTTGGA
GGGTGAAAGTTGTTGAGTGCCTTTAACTAGCCATGCATTGTTTGTATCCTGCAATTGTTTATGA
CCTGAGCAGTCTTCAGTCAGCATTCATTCTGTTATTTGTATCTTGTTATGATAATGCAACCACA
ATATATTTCACAACAGAACACCTGAACCAACGAAAAGAAAACGAAAAAAATATTTTTTACATAC
CAGTACAGCTTATTTATTTACATATATGGAGTAAAATATTCTATGGAACATTCCCCTCACCTTA
TTTGGTACTAATGAATTTTTATTTATGTAGCAGAGTTGACAGTGAGGGTGGATGGGAAGGGTGG
GAGCTGCAGTGGAAGTGGTACTGATCAGCGGCCCAGCTCACCACGTTCAAAGCACTCTGCTACC
GAGCAGCGTCGGCGCAGCAAGATCAATGACAG
Conservation Information
Conserved circRNAs osi_circ_008112*
PMCS 0.179299914
Functional Information
Coding potential Y
Potential coding position 18212004-18209643(+)
18209577-18209643(+)
18209579-18212064(-)
Potential amino acid sequence MGRVGAAVEVVLISGPAHHVQSTLLPSSVGAARSMTGFFLRTHDFLQPLEKPTPAPTPPPTSQL
QQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQ
WTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKELT
VRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFLPEDARLPAAAGEADAGADAASD
EPAAAAAAASVPRRHRNVQHQPRRRRTPGRGCRRQGRADAVRSLGPARRRRRRAPGRRTRAPPP
PPPVDAPLRRRRAGGRHRGEAAAGVEGASRGRRVHGLWLQIQWRRRVRRRRWRGRAA*(+)
MDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQ
RRRSKINDRFLPEDARLPAAAGEADAGADAASDEPAAAAAAASVPRRHRNVQHQPRRRRTPGRG
CRRQGRADAVRSLGPARRRRRRAPGRRTRAPPPPPPVDAPLRRRRAGGRHRGEAAAGVEGASRG
RRVHGLWLQIQWRRRVRRRRWRGRAA*(+)
MNPPPPTRPFHSCCCLAAVAATCPTPAKGSVHWWWWWWCPSAATGCAAAAAAGWPQRTNGVGSA
LTTAAATGRAPATWLMLNVPMPPGNACCCCCCSWLVGGGVGAGVGFSSGCRKSCVLRKKPVIDL
AAPTLLGSRVL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015