Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os09g0475400_circ_g.2 |
| ID in PlantcircBase | osa_circ_039559 |
| Alias | Os_ciR11847 |
| Organism | Oryza sativa |
| Position | chr9: 18208624-18212111 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Os09g0475400 |
| Parent gene annotation |
Helix-loop-helix DNA-binding domain containing protein. (Os09t04 75400-01);Similar to cDNA clone:J023084K14, full insert sequence . (Os09t0475400-02) |
| Parent gene strand | + |
| Alternative splicing | Os09g0475400_circ_g.1 Os09g0475400_circ_g.3 Os09g0475400_circ_g.4 Os09g0475400_circ_g.5 Os09g0475400_circ_g.6 Os09g0475400_circ_g.7 Os09g0475400_circ_g.8 Os09g0475400_circ_g.9 Os09g0475400_circ_g.10 |
| Support reads | 2 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os09t0475400-02:3 Os09t0475400-01:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_008112* |
| PMCS | 0.179299914 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
18212004-18209643(+) 18209577-18209643(+) 18209579-18212064(-) |
| Potential amino acid sequence |
MGRVGAAVEVVLISGPAHHVQSTLLPSSVGAARSMTGFFLRTHDFLQPLEKPTPAPTPPPTSQL QQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQ WTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKELT VRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFLPEDARLPAAAGEADAGADAASD EPAAAAAAASVPRRHRNVQHQPRRRRTPGRGCRRQGRADAVRSLGPARRRRRRAPGRRTRAPPP PPPVDAPLRRRRAGGRHRGEAAAGVEGASRGRRVHGLWLQIQWRRRVRRRRWRGRAA*(+) MDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQ RRRSKINDRFLPEDARLPAAAGEADAGADAASDEPAAAAAAASVPRRHRNVQHQPRRRRTPGRG CRRQGRADAVRSLGPARRRRRRAPGRRTRAPPPPPPVDAPLRRRRAGGRHRGEAAAGVEGASRG RRVHGLWLQIQWRRRVRRRRWRGRAA*(+) MNPPPPTRPFHSCCCLAAVAATCPTPAKGSVHWWWWWWCPSAATGCAAAAAAGWPQRTNGVGSA LTTAAATGRAPATWLMLNVPMPPGNACCCCCCSWLVGGGVGAGVGFSSGCRKSCVLRKKPVIDL AAPTLLGSRVL*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015 |