Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os09g0475400_circ_g.2 |
ID in PlantcircBase | osa_circ_039559 |
Alias | Os_ciR11847 |
Organism | Oryza sativa |
Position | chr9: 18208624-18212111 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os09g0475400 |
Parent gene annotation |
Helix-loop-helix DNA-binding domain containing protein. (Os09t04 75400-01);Similar to cDNA clone:J023084K14, full insert sequence . (Os09t0475400-02) |
Parent gene strand | + |
Alternative splicing | Os09g0475400_circ_g.1 Os09g0475400_circ_g.3 Os09g0475400_circ_g.4 Os09g0475400_circ_g.5 Os09g0475400_circ_g.6 Os09g0475400_circ_g.7 Os09g0475400_circ_g.8 Os09g0475400_circ_g.9 Os09g0475400_circ_g.10 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os09t0475400-02:3 Os09t0475400-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008112* |
PMCS | 0.179299914 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18212004-18209643(+) 18209577-18209643(+) 18209579-18212064(-) |
Potential amino acid sequence |
MGRVGAAVEVVLISGPAHHVQSTLLPSSVGAARSMTGFFLRTHDFLQPLEKPTPAPTPPPTSQL QQQQQQAFPGGIGTFSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQ WTLPFAGVGQVAATAARQQQEWKGRVGGGGFMDSGSRSSGGAGFDDDDGVAARREVSSSLKELT VRVDGKGGSCSGSGTDQRPSSPRSKHSATEQRRRSKINDRFLPEDARLPAAAGEADAGADAASD EPAAAAAAASVPRRHRNVQHQPRRRRTPGRGCRRQGRADAVRSLGPARRRRRRAPGRRTRAPPP PPPVDAPLRRRRAGGRHRGEAAAGVEGASRGRRVHGLWLQIQWRRRVRRRRWRGRAA*(+) MDSGSRSSGGAGFDDDDGVAARREVSSSLKELTVRVDGKGGSCSGSGTDQRPSSPRSKHSATEQ RRRSKINDRFLPEDARLPAAAGEADAGADAASDEPAAAAAAASVPRRHRNVQHQPRRRRTPGRG CRRQGRADAVRSLGPARRRRRRAPGRRTRAPPPPPPVDAPLRRRRAGGRHRGEAAAGVEGASRG RRVHGLWLQIQWRRRVRRRRWRGRAA*(+) MNPPPPTRPFHSCCCLAAVAATCPTPAKGSVHWWWWWWCPSAATGCAAAAAAGWPQRTNGVGSA LTTAAATGRAPATWLMLNVPMPPGNACCCCCCSWLVGGGVGAGVGFSSGCRKSCVLRKKPVIDL AAPTLLGSRVL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |