Detail information of Solyc07g065080.2_circ_g.1


General Information
CircRNA Name Solyc07g065080.2_circ_g.1
ID in PlantcircBase sly_circ_002429
Alias NA
Organism Solanum lycopersicum
Position chr7: 66987672-66992473  JBrowse»
Reference genome SL2.50.38
Type   ue-circRNA
Identification method CIRI
Parent gene Solyc07g065080.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc07g065080.2_circ_g.2
Support reads 2
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc07g065080.2.1:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCGAAGCTCCACCTGAGTGAATTGACTATGTAGCCATTGATCAGAAACAATAACACCAACAA
AAGACATCTCCCTTTCCCCCGCGATTCCCAGTACTActccatgatatcctcaggcaacagaaag
atagaacacccaagtttccgtgcaacactgatgatataggtagcattcaacttcttttcctcat
ctgtcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCATGATATCCTCAGGCAACAGAAAGATAGAACACCCAAGTTTCCGTGCAACACTGATGATA
TAGGTAGCATTCAACTTCTTTTCCTCATCTGTCACAGAACAAAAGAAATTTTAGTTTGGAGCAC
TGCATCCCATAAGATGACCAAGTAGAATGAAAAATCAGAATGTGTAAAACCCTGTTGCACTATG
ACCCTTTTGAGAAACTTGATATTCTTTTGGATGATGTTAGATAGAAGACCGCAAGCATTAAAAG
CCTAGAAAGTAAGTTGCACTCTCTAGAAATTCAAATTCCTCAATCCATAAACTAAGGAAGAGTT
CAAAGCTAGTAGTTCACGCTAGAAAGTTGATTCAATATTGCAAGGGCAAGTTGGCATTCTTGAT
TGTGTAAGTGAAAGAGAAGACTCTGTCAGTTCAGTAACGGAGAGTGACTGCCTGCATGCCCAAG
AAGAGAAAAAAAGACGAGATACTAAATTTTGCACAAATAAACTCCATACCACTTTCACCCTTGG
TGACAAGATTCCAATTAACAACCCTTGGCTCCACAGCACTGAGAAGCTCGAGAAAGAACAATCC
ATTTGAAAGGCTCTTATCCTAAACAAAAACCACTAATTGCAAGTTAAAATCACAGACAAAGTTG
AAACTTACGCCAATTGAACAGGAACTGGTGATACTTCACCTTAAAACTCTCCATTTTAGATGTT
CTTCCAGTGTTTTTGACTTTTTTGTTTGCCCAAGAGAGAATATCAGCATCAGTAATCTCCTTCC
CTCGGAAACGCGATCTCAAGTTCTTCAAAAGCTGAAGCATATTAAACCTCATCAACTGCCACAG
GAAAGCTGGAAAAGAATATATATATGAATACATAAGTGATGTGCTAAGAAGCACTAATACAAGG
CTTACATATGTCGTAAAGCATATCACTCAAAGAAGAAAAACTAAGGTATTTAGTTGCATGAAAA
AACACACAAGATCAAAAAGTTCACTGCTAAGGATGCATAATAACAGATCATCAATAATGAGGGG
CTCACATATTAGGTAAGACTGCTAAACCATGAATTATGATGATTCAATAAGTGCAACCACATTA
ACAAGCCTTGAGAATAATACAACTAAAATTCCGCATTGGTTAAAATTATAATCCAATTTTCGAG
ACTACTCATTTACAGGGTCCTGGAAGATTTCTTTACTTTTAGCACCACAATAACTGGACACGTC
TTACTATGTAAGAAAAATGTTGTGTCTTAGCTTGCTAGCTTATTGAAGATGAATCATTATACAC
ATCACACAGAGAATGATTATAGTAGGAAAACAACCCAAAAGTTCCTTGATGGAATCATTTATAA
TACATAATACCATCAATAAGCTTGAATAAAGTAATAGCCCAATTGTATTAAATCATAGAATCTT
GGGAGCTCATAAATCTTTGAAGTGATTATGTTCACACATAGACAAGAAGGGAATAAAGCCTCAC
AATTCACATGTGAAACAAACAAAACGGATTTGAGACATTACCAAGTATAAGCTTCTTATTCCCT
TGGACAAAATCGTTTCCTCCCACATTTACAAGGGAAAGCTTCAACTGCTTCCCAATCTTGACAA
CTTGGTTGCAGTTTTCAACCTTCCTAAACGGCATCTTTATTGGAGGTTTCGTTGCGTGCTTCCA
ATTAACAGATCCTGGAGAAACCTTGTCCAACACCTCCAGAAGTACCCATCTACAAAAGTGAATG
GTAAAGTTGAGGCAGAGTTAAATTCTACCTACAAAGTCAAGTTACAACTTTTACAAGCAGGCGT
CCTTTTTCATATCTGGAGTGATCCATGTAACAAGACCAATCACTTACCCATTTCTTACATCTTC
AAACAAATTATTGACATAAGAGTTTATCCCAAGACTATTAATCCATAATCGAAAGCATCTCTCC
TCTCTGGAAATTAGCTCATCGTCTGTCATCATCTCTGCAAAGGATACCTTCTTGCTGTCTGTAG
ACAATCCACTCCTGAAAAAGAAACCCATTTCTCAACAATGGCCATCTGCTTCAACTAAAAAAAC
GCTTTCCTTTCGCAACTCAAACCAAAACCAAAATAATATAACAAGAAAACAGAAAATGCAGAGA
TCAGACTCATTCATACTTAGAATGACAACAGAAGGCTCCAGAAATACATAAAATGTAAAAGGCA
GATGGTGACTTTTGTAGGCACATTGTTTTAGAATCTAAGTGGAGCATCAATCAGGAATATTTGC
AAAATAGATATCTCAAGCAATAAACAAAAGAGAGGAAAATGTAGTTGTGCATGCACAATAAATA
CATGATTGCTTTTACAGCATTTGAAATGTTCCTCAAAAATAATGTGATTACCCCTCTTGTGCTT
CTATGATTATGTTGCCAAGTATCATACTGAGCACAACAACAAAAGGAGCTAGAAAAGATTAAAA
AAAGTGTAGCCACGTTAGGGTCCTACCGTCCTACCTCTACTGGAATATTTTTGCAACAAAAGCA
AGATTATAAATTGGATGAACCTTCAACTATGTCCTAAGTATCATACTGCGGACAATCACAAAAG
ATAAAAAGAGAGAAGCCATGTTAGTTTTCCTACCTCTGATGGAATATTTGTGCAACAAAAGCAA
GATTTAAATTGGATGAGCCTTCAACTATGTCCTTAGGATCTAGGTATCTTTTGCAATCCATTTT
CTCCGCATGCTCAAGAACTAAGTTAGCTCTCTCAGTGGGATCCTTGACATCCAAGGTTGCTGGG
CTGCAATGCTCTGGTGCAAGTACATTAAGCAGGTAAGCATAGGCCTCCCCATCCTACAGGAAAG
AGCATAAATATATAATTGCCAAGAGGTCAATATGCTTTAAAATCCAAATAGTCAACATTATTTA
AGGTGTAGCTTAGATATTACACCACATTATTTGTTATGTTATACCCTGACCTGGATTGGAATGT
GTCTTGCATCTTCATTTCTATGATTATCTTTCTAAGGAACTTCTATTTTATTTTGACAGGGTAA
ACAAATTAAGAATTCCTTTAAAGGGAACTTTTTAACTAATTGATATTGGGAGGACAGGGGGAAG
ACAAAGAATATATATACCTTCAAGTCAGAAGAAAAATTTGCCACAGTTTTCTTGTAACCGGCTT
TCTTCAGATGAAAATTCATCCATTTTAGCAAGAGTTTTTCTGGAGCTAACCCCATGAGCTCCTC
GACATCCTGAACAAGTTAACAATAATCAGATATTTGCTTGTATAGTTCGTAGATATGCACATGG
ATTGGAAATAAAACCAGAGCCGCTTCGGACAAGAGAGATTAAATTACATTGCTGTCTTCCACAA
GTTCCACAAGCTGAGGAGTCTTCCGGAGGTTGAGATCTGCCAATAGTTGGATCTTCAGATACAC
AATCGGCAAGAACCGGGAGAGGAGAGAGACAGAAAAAAGTCAGTATAATCAACCCAAATTTCAA
GTGCTATACGATTAACCAAACATAATCTGCCATAACTGTAGTGCCCTTTTGCGACTCCATAAAA
TCTAGGCAGAGAACACATAGAAATATAAATCAGGACCTAACCTTTATGATTTGAGAAATAAGCC
CAAGTACTAGGTGAGGCTGCAAAGATATAGAGAAAAAAAACTTATACATACATCCCAGAGGTTC
ATTGAAGTAATGCAAATGAAGAAAAAATATTGAACTCACTCGTCCTTCAACCAGGTCCTGAGTG
CCAATATTGACAACAGTGCAGCCAATAGCCTTTGCAGAATTGAGGCAAAGGGTGTGATTCTCAT
TTCTCTCCCATGGATTAATTACTCGTTTCATGTTAATAGCCCGCTCGTCTATTGTGCCAGGTAC
AGCTACATTGATCAGCTTACTAATGAACCAAATAAAGAAAAGTATAATGAGCCAACAGAAACTC
TCATCATAGAATAACATAAAAACAGGTTAAGTTTAAATACCATAAAAGAACTCCATCCTTTGCC
AAATCAAACAAAGCATTTGAAGCTGGATCTATTGGAAGAAATTGCTTTAAGAATGGATCATCTC
TTAAATAGCTGTTTATATGAGCAACATAAGATGATTTCTCTGATTCACTGATCGTGTGAAGGAG
TGTAGTTGTGGAAGCCTTCAGGAAGGACGACGAACTTTTAGAACTGCCTACTTTTGGGGCAGCT
CGAGCTTGTAGATTCAAGTATGTCTGTCGAACACAAGCAATTGACCATAATGTCACTAAACTAA
AATTCAGAATAATGAGGTGAAAGTACAGCAAATTCTACTTTCTTGTTAATCAGCTAGAACCCCT
GAAAACTTTGTTTAACTACTAGACTAATCTACATTGTTCATTTCCATTCAGTCAACAGCAATGA
GTAAACAAACCAAATGGACTCGCTAATACAAAAAAAAAAAACTTAATTAAATACTCACTTTAAG
GAAGCTTTCGAAATCAATCTCATCATTCACATCTGAACCTGATTCAGCCAAGATATTCCGGATC
TCTTCCTCATTAAACATCTCATTGAAAGCCTTTAGTTTCGCCATCAAAGGCGGTAAGTCTCCAA
TTGTAACTTTACCATTTTGACTCTTAACTGAAATGAACTAAGGAACCAAAAAAACAAACAAACC
AACAGATTATAAACATCACATTCAAAAAACAATACATCAATCAAATCCAACAAGCAGATAGAAA
AGGAGTCGAAACCATACTTTCGATTTGAGGCTGCGAAGCTCCACCTGAGTGAATTGACTATGTA
GCCATTGATCAGAAACAATAACACCAACAAAAGACATCTCCCTTTCCCCCGCGATTCCCAGTAC
TA
Conservation Information
Conserved circRNAs NA
PMCS 0.193161464
Functional Information
Coding potential Y
Potential coding position 66987747-66992418(-)
Potential amino acid sequence MLPISSVLHGNLGVLSFCCLRISWSSTGNRGGKGDVFCWCYCF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016