Detail information of BGIOSGA014575_circ_igg.1


General Information
CircRNA Name BGIOSGA014575_circ_igg.1
ID in PlantcircBase osi_circ_014640
Alias Chr04:28420609_28422411(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 26639054-26640862  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCAATTCTCAATATTGTCCTTAGCTCAGTGATATGGGCTTCAAATTCAGTGACTGAAATACT
GCGCGCAAGATAGTAACTAGTATTCCATCAAAAGAAccatgtcaggtcaccaagaaaagctcga
agtccatcagcaatggtgttggttgaaggcaatgttatgatctttccagcagccttggactggg
cagaatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATGTCAGGTCACCAAGAAAAGCTCGAAGTCCATCAGCAATGGTGTTGGTTGAAGGCAATGTT
ATGATCTTTCCAGCAGCCTTGGACTGGGCAGAATCATCAGCACCCTTTGGTTCTGCTGCCAGAA
TACGTATTGAAGGGTTTATGGCCTTGGCAGCCAGTGCCACACCAGAAATTAAACCACCACCTGT
AGTGTAGCCAAAAGTATATGCATGCGTCAAAATAGAAAAGAAAGACTTGTGTTACAGAAGAAGT
TAATACAGTAGAGTACAGACCACTGATTGGAACAATTATTGTGTCAATTTCAGGGACTTCCTCC
AAAAGTTCGAGAGACACTGTACCTTGACCACTGAAAGAAAACATCATATCAGAATTTGCATGAT
TCACTGAAAAGTTCATGTTTGCTATTCGATAAGCTAAGAGTACACATTTTAAAGTGGCAAGACA
TGGAAAGAAACTAAGGTTGTTAAACACAAGCTGTATGAAATATGTCAAGTAGATATTGCCCTTT
TTAGTCTAGGCTGGTATATAAAAAAAATCATGAAACCTGGATGAAATATGATTTAAGAGTAATG
ATATCATATACAGTTTGAATTAAGTGCTGATTTCATGAATTGATAGTGAACCAAGGCTACTATC
AAGTAATTTCATATACTCGTAAGAAGAAGAGCCTATCAAAGTTCACCCCGCTCTGTCCATTTCA
AATCCCAAATGGACTTCTTTTGCATCAAAGTAGTAAGCTCAGGAATTGGGACTACCAGATAAAC
AATAGAGTACTAGTGACATGTTCAATCCACTTAGACTTTAGCAGCACCAGTATCTAGGGGTATG
ATATGTTAAAGCAAACAGCTTTTAGTCTCTGTACAATGTGTTCATGATTTGAGATATGAACAAA
CTTTCCGCATAGCAACAGAGCAACTCAATAAAAAAGAACTTAGAACAGAGAAATCATACCTGAT
AGTGTTTTTATTATTGAATGGGTGAACAAGAATAGCACCAGTTTCCTCCTGAACTCTTTTAGCA
ACAGATTCTCTTGATTCAATGGAGACATCACTCCAGATAATATGGCCACCGTACCGCTTAACAT
TGTCTACCTTACATGCCGGTGCATTTCTTGGAATGACAATGTAAGCAGGTATTCCGCGTAGCTT
TGCAGCAAGAGCCACTGCAGCAGCATGGTTCCCACTGAGAAGAAACCATTTCAATCAGTTCAGT
TCACTGTGATGCTTCTTAGGATTAGGATGCCAGGTAACATTGCAATAACTATGAAGCTAGCACT
AACCTGCTATGCGTCACAACGCCCTTGGATGCCTCATCATCATCAAGCGCAAATATCGAATTGG
AAGCGCCTCGGATCTTGAATGCCCCTCTACATCATATATTCATATCCCCACACAAGCAATTAGC
AGCAGGTAGAAATTAGCATGGCAGATATGCCAAACAACACACGGGGGGGGGGGGGGGGGGGGCA
GTGACTCTCACGCCTTCTGGAAGCACTCGCACTTGAAGAACAGCTGCTTCCCCACTATGGCATC
GATCGATGTTGATGACAGAACGGGCGTCTTGTGCACGTATGGTGCGATGCGAGCCTGCGCCTCC
CTGATGGAGTGGATGTCCGCGGCATAGCCATGGCTTTCTGCGCCATCGCCGCCACTTCCACCTC
TGCTCCCCATCAGGCCCTAGTAAGTACTCGTGTTAGCTAGCACCACATCAATTCTCAATATTGT
CCTTAGCTCAGTGATATGGGCTTCAAATTCAGTGACTGAAATACTGCGCGCAAGATAGTAACTA
GTATTCCATCAAAAGAA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021