Detail information of BGIOSGA031535_circ_g.1


General Information
CircRNA Name BGIOSGA031535_circ_g.1
ID in PlantcircBase osi_circ_008609
Alias Chr10:21991664_21993598(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 19119884-19121820  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031535
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA031535-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAATTGTTGCACTTTCTGGCCTAGGTTTGTTCCACATAGCCTGGTAGCGACTCAAATTATGTAC
CCGTCCATGATTGTCCATTACTGCCACATTGTGAACcctcgtggcaatgtcctcagcaagttcc
cttgcctctcctgaaccagacctcaacaatccctcgactatcagatgctgcaacggggcccatc
cgtttgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGTGGCAATGTCCTCAGCAAGTTCCCTTGCCTCTCCTGAACCAGACCTCAACAATCCCTCG
ACTATCAGATGCTGCAACGGGGCCCATCCGTTTGGAAAATCCCTGTTCAAAAATAGAGGAAACC
TGTTTAAGCGAAGGAAACCACATGGTTTCAGGGAGAGAATGCTCTTCCAGTGAACTGACCATTG
TTGCCCTGTGTTTGATAAGGAAGTTGCGATTCCTGCAGGTTGCAGTAATCCTGATTTCTGGAGG
CTTCTCATGACTCTCACTGATTTTGCCTCATCGACAAATTGCTCCAAGCCTAATTATGTTTCAG
ACAATATTATTCAGTAACTATGCAAGAAAAGGGTGAAAGATTTTTTTTTATTTTTTTAAAAAAG
AGTAAGAGCTGTGATGTGATCACTAGAGTTATAATACTAACTACTAAGAACAGCTCCAGCAGTT
ATAAACATGTAATGAAGAAAGCAAGTTGTAAGATAAATGACAGACCGACGCACATCATGAAGTA
TGAGCATGATACAGAGACAAACGTGTTAGATACTTTCTATAAGATTTGTCTGCATTAACTGTTC
AGTTTCTAGCCATTTGGTGGTTAAAATTTCATGGGATACTCGTACTAGACCTCATAAAAGGAAA
TTCAGGACAAGGCAGCCAACTCATGAAAAATATGTAGACAGATACTACCGTGTAGTTTTAGATA
TTCCCAGAATAAAGCATTACACCCTGGCATTAGAAGATAAGCACAAGGATGGGGGGTCTACAGG
ACAAACCTGAATGTTGAGCATTTAACCACAAAGGTACAAAATTAGAAGCAAAGATGGCGCGGTT
CTGTGAGATAGATTTCCATTGGTAGACTCCCTGTAAAATAGTAGTGTCATCAAGTTAATAAAAT
CAAGGTTGCTTGCACAAATGGAAAAGAATATAGGAGATCAACAGATATCAATTGGGAAAACCTG
GCAGTTTCCATCAGTAGGAAGCCAGTAGTCAAGCCATTGCTCCATGTCAGCGTTCCACAGAACA
GAATCAATTGCATTATGGCGTGCTTTTGAAGCCTCTGAAAATATTTCTGATGTTGTGCTCTCTC
CAATGAGTTTAGCAAAGAAAGCTATGTCCTGCTCCATCTGAGTTGTGTACAAAGTGAGGACCAT
GTCAAATTTCTGAGCATTGTTGACTTTACCAATTAAGGATATTTTTCCCAACAAGCATCTCTAG
CTATTATGGGCACATTAATATTGAATAAGCGAACTACAAAGCATTCTAAACCTGATGCATACAA
ATCATGCTGAATCTATAAACTATGTGTTCAGAATTCGAATATCATGACAAACTCCATACTTTGC
TGAATTTGTATGTCATGCATGTTTGGAAATCAAATATCGTGACACGCTATATGTCATACCTTCA
ATATGAATGTGTTCAAGTCCACAGGTATTATGCAAGATGTTGTCAGAGTTGTCATGTCAGTAGA
ATCCCTGGATAAGCAGTTAAAGAAAAACTGAAATCAGCATGTGGCATCACAACAGTGAATTTGA
TATCATTGGAGCTCATAATGTCTTCTTTAGTACTGTGCACGTTAACTAATTAACAGTCAAACAA
ATACATTTCTATCGGTAATAACAAGTTTTTTACATCCAACCTCATCCATCGAGAGCTAAAATCC
CATCCTGTTTCAGCTGTAGAAGCAACTTGGTGGTAGAATTTTTCTTTAGCAGCCGTAGAAAGTT
TTGAAGCAAATTCCTCATCCTAAATTCAGAACAGACCATAGTTAGTTAATCCTTGAGAAGCTGC
CATTGCCACCAGCAAGTTAACATCGTGAACATCATCAAAACTTTACAATTGTTGCACTTTCTGG
CCTAGGTTTGTTCCACATAGCCTGGTAGCGACTCAAATTATGTACCCGTCCATGATTGTCCATT
ACTGCCACATTGTGAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR166l-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021