Detail information of Os01g0121800_circ_g.1


General Information
CircRNA Name Os01g0121800_circ_g.1
ID in PlantcircBase osa_circ_000177
Alias Os_ciR5068
Organism Oryza sativa
Position chr1: 1235489-1236500  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0121800
Parent gene annotation Glycosyl transferase, family 14 protein. (Os01t0121800-01);Simil
ar to xylosyltransferase 1. (Os01t0121800-02)
Parent gene strand +
Alternative splicing NA
Support reads 3/1
Tissues root/shoot, root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os01t0121800-01:3
Os01t0121800-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTTTCTCATTTTGCATAGAGGGGCTCTTCACGAACTTCAGCAGTTAACGCTTCCAGAGCGAA
CATTTTTGCACCTGGGTTACAAGCACACGTCCAAAGacttgattcatgtcttctcctcagtgcc
aaggcatctcaacttcatcgatcacactagtgatattggatggaaagagtatgttatatctgaa
cttataaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTTGATTCATGTCTTCTCCTCAGTGCCAAGGCATCTCAACTTCATCGATCACACTAGTGATAT
TGGATGGAAAGAGTATGTTATATCTGAACTTATAAATAATTTATCTGCGCAAGTATTAGTTTCA
CCAACATGCTGTGGGTAATACTGTTACAGGACTCAGAGAGTGCAACCAATCATAGTAGATGCTG
GAATATACTTGGCAGGAAGAAATCAGTTCTTCCAAGCCACAGAGAAACGTGATACTCCTGATGG
TTTCAAATTCTTCACAGGCATTTTCTGACTCCTTTCACTTCATTTTCCTTCGTTTGATCAACTA
GTTCTGTGATTCATGGGTTTCCTCACATACAGGTTCTCCGTGGGTCATTCTAAATCGACGGTTT
ATAGAGTATTGCATATTTGGTTGGGAGAATCTCCCTCGAACTCTTCTCATGTACTTCACAAACG
TAATGCTACCTCAGGAAGGGTATTTCCACTCAGTTGTATGCAACTCAGACTTCCGTAACTCCAC
AGTTAACAGCGACATGCGGTATATGGAATGGGATGATCCACCCCAGATGGAACCCCATTTTCTG
AACACGACACATTATGATGAGATAGTGGAGAGCGGAGTGCCTTTTGCTAGAAAGTTTCGGGAGA
ATGAACCGCTGCTGGACAAGATTGATGAAAGAGTACTCCACCGTTGGCGTCACAGACCTGTTCC
TGGTGCCTGGTGCACAGGCAGAAAAAGGTGGTTCAATGATCCATGCTCCCAATGGAGCAATGTC
AACATTGTAAGACCTGGTCCCCAGGCTGAGAAGTTCCGCAAACATATGAATCAGATCATAGAGG
AATCTGCATCAGGCAACAACTCATGCAAGCAATAGCAGCAATGAAGCGCGAGATTTCACTTCCC
ATGTTTGAAGCGATGAGCTTTTCTCATTTTGCATAGAGGGGCTCTTCACGAACTTCAGCAGTTA
ACGCTTCCAGAGCGAACATTTTTGCACCTGGGTTACAAGCACACGTCCAAAG
Conservation Information
Conserved circRNAs osi_circ_009375
PMCS 0.381273147
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017