Plant Circular RNA Database

Detail information of Zm00001d032637_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d032637_circ_g.1
					
						ID in PlantcircBase
						zma_circ_006812
					
						Alias
						zma_circ_0000432
					
						Organism
						
							Zea mays						
					
						Position
						
							chr1: 232686060-232688164  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d032637						
					
						Parent gene annotation
						
							 myosin1
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d032637_T013:4
Zm00001d032637_T006:4
Zm00001d032637_T008:4
Zm00001d032637_T001:3
Zm00001d032637_T021:4
Zm00001d032637_T027:4
Zm00001d032637_T029:4
Zm00001d032637_T020:4
Zm00001d032637_T018:4
Zm00001d032637_T017:4
Zm00001d032637_T004:4
Zm00001d032637_T015:3
Zm00001d032637_T012:5
Zm00001d032637_T025:4
Zm00001d032637_T002:3
Zm00001d032637_T023:5
Zm00001d032637_T026:3
Zm00001d032637_T031:4
Zm00001d032637_T009:4
Zm00001d032637_T033:1

General Information
CircRNA Name	Zm00001d032637_circ_g.1
ID in PlantcircBase	zma_circ_006812
Alias	zma_circ_0000432
Organism	Zea mays
Position	chr1: 232686060-232688164 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Zm00001d032637
Parent gene annotation	myosin1
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d032637_T013:4 Zm00001d032637_T006:4 Zm00001d032637_T008:4 Zm00001d032637_T001:3 Zm00001d032637_T021:4 Zm00001d032637_T027:4 Zm00001d032637_T029:4 Zm00001d032637_T020:4 Zm00001d032637_T018:4 Zm00001d032637_T017:4 Zm00001d032637_T004:4 Zm00001d032637_T015:3 Zm00001d032637_T012:5 Zm00001d032637_T025:4 Zm00001d032637_T002:3 Zm00001d032637_T023:5 Zm00001d032637_T026:3 Zm00001d032637_T031:4 Zm00001d032637_T009:4 Zm00001d032637_T033:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GACGCTTGCCAACTGAGAGAGACTTATTAATTTGTTCTACAAGCCACTCAAACAAACTGGCATA
CACTGATTTGGCCAGAGCATCTCTTGTGTCAGTTGCctctcctgcatagtgacggacagcaaat
gccttgcctctttctcctctgaagcaagaattcgagtcaagatgttgcttaagcttgtttgcaa
aagtaaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTCCTGCATAGTGACGGACAGCAAATGCCTTGCCTCTTTCTCCTCTGAAGCAAGAATTCGAG
TCAAGATGTTGCTTAAGCTTGTTTGCAAAAGTAAGATCTGTGGCATTCGGGAAAGTAGATTCCT
CATCCAGCAGAGACAATAGTCCCAGTGGTTTCTGCATTAAGAATGTTAGACAGCAAGAATATAT
ATGTTACTACATGGCTGCAGGTCAAGTTTGCAAGATATACAAAGCAAGAGAAATTAGGATAGTT
CATCAAGTTTTCAGATCCTGTAAATGAAATTATGAAACATAATAAGAAAAAAGTATATATGTCT
AAGTGTTATTGATTTAATAAGAACAAAACAGAGTGTTAACGCAACCTCCTTACTGTATAAGAAA
TCCGTGATCTAGTGGCTCTAAGCAATATTCTTGCATTATCATCTTGGTTTGAGAAATCAGTTAT
TGTACTTGTAATACTTATGAGGTCTATGTATGTTTGCTCTAAACCATAACTTCACTTTATCATC
ATGGTTTGATAAACCAGTATGTCCTTTTAATTATTTTGTAATATTGTCCAGATCCATAAATGTC
AATCCACCAAAGTTTTGGCAAAACTCCATAGAACCAACTTATATTTAACAATAATATCTGGAGA
GTGGAGTATTCTGAAATTCATAGATTTTAACTTTCAGCCATTTGACACATTGTTTATTCTCCCA
AAAAAAAGTAGCAGACCGCATGTCATTTCATCTAGAAGGAAATAGTACAAGATGAGGTCAAGAG
ACCTCGCCCAAACCCACCCAGCCATTTGGATAGTCTTCCCAGAAAATTTCACTTTGACAAGTAT
TATTTGAACAAACAAATATTTATGTGTCTCTTCTAATATACCATACTTTTCAGCCAAAAGAAAG
CATATGGTCAACAAAATTTGTCCCTTTTTCCGGGCCGATAATAGATCAGGCATCCTAGCAGGCA
GCAGTACTTTGCTTATTGTGGAATAGGAAAAGTTTTTTTAATCTTAAATAAGTATTGCAGATTT
GTTTTCCTCCAAGAACAAGAATTGTTACATGAGAACAAGCATAGGTCAGTTGTTAAAGGCTTAG
AGCTTGAGGGAACAACACCCTGTTGCCCACCCAAGTTTGAACCTCTGGCCAGCTGCAATTCATT
AATCATTACTCTTCTGCCTAGAAATTCAAAACCCAGGAACACCTTCCACCTCCCACCATGGTCG
TGCGTGTGTTTGGGGGGGTTGCTAAATGCTAACTAATGAATCCCCAGGACTTGTGGACCCATAT
TTTTGTTAGCAAGTGACATCAGTGAACAGAATGTAGTGACTCATACTTTCTCAAAGAGGCTCAA
ACAGTCCTGATTATCCTCGAAGTCAACCTTTGCCCAGTCGATGCCATCCTCCACATATTCCTGT
TCAAAGAAACAAATTGATCCTTTGTTGACAGTATTAAAAAATATCATGAATAACTAATATTTCA
TGTAAACACAAATTTCCACTTAGACAACACACTAGCACACATTCTAGAATCGCATTCCATATTT
CTGCCTAGAACACCCCAAAAAAGCACAATAATAAGCTTGTGATAATACTACTGTTCAAAATTAC
TTAACTAAGCATGGGATGGACTGACATAACAAAAAACACAAAGATGATTTAATAATAAAACAGT
TCATAGCATAATAAATGAACCGTTATTCTAAAAATCACACTTTTTAATGTTAACCAATTGATTA
AAATAATTGCAACTTGAGAGAAGACTCTGCACGTTGAAACATAAAAATAAATTACCTCTTGCTC
AAGCTTAAACAAATGACGATTGAAATGTTGCTGCAACCTTTCATTAGCATAATTAATGCAGAAC
TGTTCAAAACTGTTCTTCTGCAAATATGATAATGTCAGAAGTAACTATATGGAATTTAATATAT
ATGACAACTTTAGGTAAAGAAAAGTGCATTACATCAAATGATTCAAAGCCATAGATATCAAGAA
TACTGATAGATCTCCCAGTTCGACGCTTGCCAACTGAGAGAGACTTATTAATTTGTTCTACAAG
CCACTCAAACAAACTGGCATACACTGATTTGGCCAGAGCATCTCTTGTGTCAGTTGC
						
					

			
		

Sequences
Splice junction sequence	GACGCTTGCCAACTGAGAGAGACTTATTAATTTGTTCTACAAGCCACTCAAACAAACTGGCATA CACTGATTTGGCCAGAGCATCTCTTGTGTCAGTTGCctctcctgcatagtgacggacagcaaat gccttgcctctttctcctctgaagcaagaattcgagtcaagatgttgcttaagcttgtttgcaa aagtaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTCCTGCATAGTGACGGACAGCAAATGCCTTGCCTCTTTCTCCTCTGAAGCAAGAATTCGAG TCAAGATGTTGCTTAAGCTTGTTTGCAAAAGTAAGATCTGTGGCATTCGGGAAAGTAGATTCCT CATCCAGCAGAGACAATAGTCCCAGTGGTTTCTGCATTAAGAATGTTAGACAGCAAGAATATAT ATGTTACTACATGGCTGCAGGTCAAGTTTGCAAGATATACAAAGCAAGAGAAATTAGGATAGTT CATCAAGTTTTCAGATCCTGTAAATGAAATTATGAAACATAATAAGAAAAAAGTATATATGTCT AAGTGTTATTGATTTAATAAGAACAAAACAGAGTGTTAACGCAACCTCCTTACTGTATAAGAAA TCCGTGATCTAGTGGCTCTAAGCAATATTCTTGCATTATCATCTTGGTTTGAGAAATCAGTTAT TGTACTTGTAATACTTATGAGGTCTATGTATGTTTGCTCTAAACCATAACTTCACTTTATCATC ATGGTTTGATAAACCAGTATGTCCTTTTAATTATTTTGTAATATTGTCCAGATCCATAAATGTC AATCCACCAAAGTTTTGGCAAAACTCCATAGAACCAACTTATATTTAACAATAATATCTGGAGA GTGGAGTATTCTGAAATTCATAGATTTTAACTTTCAGCCATTTGACACATTGTTTATTCTCCCA AAAAAAAGTAGCAGACCGCATGTCATTTCATCTAGAAGGAAATAGTACAAGATGAGGTCAAGAG ACCTCGCCCAAACCCACCCAGCCATTTGGATAGTCTTCCCAGAAAATTTCACTTTGACAAGTAT TATTTGAACAAACAAATATTTATGTGTCTCTTCTAATATACCATACTTTTCAGCCAAAAGAAAG CATATGGTCAACAAAATTTGTCCCTTTTTCCGGGCCGATAATAGATCAGGCATCCTAGCAGGCA GCAGTACTTTGCTTATTGTGGAATAGGAAAAGTTTTTTTAATCTTAAATAAGTATTGCAGATTT GTTTTCCTCCAAGAACAAGAATTGTTACATGAGAACAAGCATAGGTCAGTTGTTAAAGGCTTAG AGCTTGAGGGAACAACACCCTGTTGCCCACCCAAGTTTGAACCTCTGGCCAGCTGCAATTCATT AATCATTACTCTTCTGCCTAGAAATTCAAAACCCAGGAACACCTTCCACCTCCCACCATGGTCG TGCGTGTGTTTGGGGGGGTTGCTAAATGCTAACTAATGAATCCCCAGGACTTGTGGACCCATAT TTTTGTTAGCAAGTGACATCAGTGAACAGAATGTAGTGACTCATACTTTCTCAAAGAGGCTCAA ACAGTCCTGATTATCCTCGAAGTCAACCTTTGCCCAGTCGATGCCATCCTCCACATATTCCTGT TCAAAGAAACAAATTGATCCTTTGTTGACAGTATTAAAAAATATCATGAATAACTAATATTTCA TGTAAACACAAATTTCCACTTAGACAACACACTAGCACACATTCTAGAATCGCATTCCATATTT CTGCCTAGAACACCCCAAAAAAGCACAATAATAAGCTTGTGATAATACTACTGTTCAAAATTAC TTAACTAAGCATGGGATGGACTGACATAACAAAAAACACAAAGATGATTTAATAATAAAACAGT TCATAGCATAATAAATGAACCGTTATTCTAAAAATCACACTTTTTAATGTTAACCAATTGATTA AAATAATTGCAACTTGAGAGAAGACTCTGCACGTTGAAACATAAAAATAAATTACCTCTTGCTC AAGCTTAAACAAATGACGATTGAAATGTTGCTGCAACCTTTCATTAGCATAATTAATGCAGAAC TGTTCAAAACTGTTCTTCTGCAAATATGATAATGTCAGAAGTAACTATATGGAATTTAATATAT ATGACAACTTTAGGTAAAGAAAAGTGCATTACATCAAATGATTCAAAGCCATAGATATCAAGAA TACTGATAGATCTCCCAGTTCGACGCTTGCCAACTGAGAGAGACTTATTAATTTGTTCTACAAG CCACTCAAACAAACTGGCATACACTGATTTGGCCAGAGCATCTCTTGTGTCAGTTGC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.076685218

Conservation Information
Conserved circRNAs	NA
PMCS	0.076685218

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							232686192-232688103(-)
						
						Potential amino acid sequence
						
							MRNLLSRMPQILLLQTSLSNILTRILASEEKEARHLLSVTMQERQLTQEMLWPNQCMPVCLSGL
*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	232686192-232688103(-)
Potential amino acid sequence	MRNLLSRMPQILLLQTSLSNILTRILASEEKEARHLLSVTMQERQLTQEMLWPNQCMPVCLSGL *(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d032637_circ_g.1

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