Detail information of BGIOSGA008323_circ_g.1


General Information
CircRNA Name BGIOSGA008323_circ_g.1
ID in PlantcircBase osi_circ_003969
Alias 2:20399023|20399189
Organism Oryza sativa ssp. indica
Position chr2: 20399023-20399189  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA008323
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAGGAAGCTCCAGCAGTTTCATTTCTCAACAGTTGGTGGAAAAGTTGGGGTTGGCTGTTAC
AGATATTCCTTTATCTCAGaatgtgttgtgtctggaactatgggaaagaagaccatcaggttgc
aaggattgatacagaatcatgaagttctgattctcattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGTGTTGTGTCTGGAACTATGGGAAAGAAGACCATCAGGTTGCAAGGATTGATACAGAATCA
TGAAGTTCTGATTCTCATTGATTCAGGAAGCTCCAGCAGTTTCATTTCTCAACAGTTGGTGGAA
AAGTTGGGGTTGGCTGTTACAGATATTCCTTTATCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021