Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d019905_circ_g.2 |
ID in PlantcircBase | zma_circ_009285 |
Alias | Zm07circ00036, GRMZM2G432075_C1 |
Organism | Zea mays |
Position | chr7: 74377876-74379612 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d019905 |
Parent gene annotation |
argonaute6 |
Parent gene strand | - |
Alternative splicing | Zm00001d019905_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d019905_T006:3 Zm00001d019905_T001:5 Zm00001d019905_T009:5 Zm00001d019905_T003:5 Zm00001d019905_T008:4 Zm00001d019905_T010:5 Zm00001d019905_T002:5 Zm00001d019905_T004:5 Zm00001d019905_T007:5 Zm00001d019905_T005:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.175924918 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
74379489-74377888(+) 74379539-74377878(-) 74377912-74379587(-) |
Potential amino acid sequence |
MPSSFPSSSGLNRESIISTFGDWVRTDALYRDINGQHLDPTTIGPA*(+) MIDSLFKPLDDGKDDGIMRELLLDFYQTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAY QSMGQGDLPKFTVIIAQKNHHTKLFQADSPENVPPGTVVDSGIVHPRQYDFYMCAHAGPIVVGS RCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIMRELLLDFYQTSQQRKPKQIIIFRDG VSESQFSQVLNVELNQIIKAYQSMGQGDLPKFTVIIAQKNHHTKLFQADSPENVPPGTVVDSGI VHPRQYDFYMCAHAGPIVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIMRELL LDFYQTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQSMGQGDLPKFTVIIAQKNHHT KLFQADSPENVPPGTVVDSGIVHPRQYDFYMCAHAGPIVVGSRCWPLISRYRASVRTQSPKVEM IDSLFKPLDDGKDDGIMRELLLDFYQTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQ SMGQGDLPKFTVIIAQKNHHTKLFQADSPENVPPGTVVDSGIVHPRQYDFYMCAHAGPI(-) MISTCVLMPDQLLLDLDAGH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |