Detail information of Zm00001d028971_circ_g.1


General Information
CircRNA Name Zm00001d028971_circ_g.1
ID in PlantcircBase zma_circ_000615
Alias circ143
Organism Zea mays
Position chr1: 53296464-53298241  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI
Parent gene Zm00001d028971
Parent gene annotation Mitochondrial import receptor subunit TOM40-1
Parent gene strand +
Alternative splicing NA
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d028971_T004:6
Zm00001d028971_T001:6
Zm00001d028971_T002:6
Zm00001d028971_T003:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACCAAAGGAAGTCTGGA
ATTGGTTTTGCCTCTCGCTATAACACAGACAAAATGgtgtctttgaagcctgaactttttgaag
gattgaggtttgacttcacaaaaggattgaatcagaagttttctcttagccacaggtgagacca
tacataaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGTCTTTGAAGCCTGAACTTTTTGAAGGATTGAGGTTTGACTTCACAAAAGGATTGAATCAGA
AGTTTTCTCTTAGCCACAGGTGAGACCATACATAAATGTTAGCAAATATCTTGTGTTATATTTG
TCCAGCCCTAACAACATCTTCCACAGCATTTTTATGGGCTCCTTAGAAGTTCCAGCCCAGGCAT
CTGAAACTATTAAAGTTCCAACTGCACATTATGAATTTGGCGCCAATTTTTTAGATCCAAAGGT
TTGTTTCCATGCCATCAATTGTTATTGTGGAATCTTCCATAATGGTGTATTTCTTAACTCGTTT
GCTTCTTTGCATGAAACTGCATGTAGTTAATGCTCATTGGAAGGGTGATGACAGATGGAAGGCT
TAATGCTCGTGTGAAATGTGATTTGACAGACAATCTGACGTTGAAAGTAAATGCACAGGTAGAT
GAATCAAAGACTTTATGTTTACTGGTTCATCCTTTCTTTTGTTGATACTTTCCTTTCCTTATTC
TACTGATCATTGCCCTTTTCCCAGCTTACCCAAGAGGCACATTACTCACAAGGGATGTTTAACT
TCGACTACAAGGTTGTCATTTCTGACAATCCCGTTAATTGTAGTTTTCCAAACTTTCACGATTA
ATTTTTTATTAGCATTTCTAATAGACAAACTTTTACTTTACTTCTAGGAGTACTTTTATCATAC
ATTTATTAGTTCCTTGCATCAACACTTAACTTATTTGTACAGGGAAGTGACTATCGAGCACAAT
TCCAAATTGGGAACAATGCATTCTATGGTGCAAATTATATTCAGGTAAACACTTCAGCAATGCA
TTTTACTTTCTAACTTCCATCTTAATGTTAATGAGTTGTTGTAGAAAGATGGGAAAATGACTCA
TTTGGTGGTTTAATGCCATGGAGAATTCAGTAGCGTTGGTTTATGTCCTCTGTTCATATTTGTA
CTTCTTGAAATCTGTTTGAGTTGTATATATCTTTTTCCGTAGGCATTTACTGTTTGAATGCTTA
GCTGCTGTCAATTAGCAGGCCTGATGCAGTGGTGAGAGCTGTCTCACTGATTCACCAGGTCGTG
GGTTTGAAGCAGCCTCTCCACATTTGCGGGGAAGGCTTGCCTCGATTTATCCCTTTTCGAGACC
CCACTCATGTGGGAGCCTCTGTTACTGAGTCTGCCCCCTTTTATTTACTGTTTGAATGCTTAGC
TGTCGTCAATTAATTATCTTAGTACCTTGTTGATGTAATGATGTGGATATGCTAATGATTAATT
CAGCCTGTGCTATGGGTGTTTAAGCTTTTAGTTTTGAGAACGAATTATATTTGACTAAAGGATG
TGTAGAGATGACAACTGAGTAGCTTGCTTCAATGCCAAATCCAAGATGAGTAGGCCATGGTAAA
ATTTGTGCATTTAGGTTATGCTAGGTTAAAAACTGACTTGTGCTATGCTTTTACATTTCGTACT
TTGCTAAGTGCTATGCTCTTTCGTTCATTAAATAATTCTTTATATGTTATTTTCTCTGTATTGA
ATTGGAGCAGGCGAATTCATGTTCTCTTCCATTAGAATGATGTGCATTTTCTATATGTTAAATT
AGTTGCCTTATTCTGGCTATAAAGATTGGTTGGTCATTGTTTAAGCTTTTTCTGATAATGAAAT
CTTACTTTTCAGAGTGTTACTCCGAACCTATCAATGGGAACTGAAATGTTCTGGCTTGGTCACC
AAAGGAAGTCTGGAATTGGTTTTGCCTCTCGCTATAACACAGACAAAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.027652859
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b