Plant Circular RNA Database

Detail information of Os02g0575900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0575900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_015146
					
						Alias
						Os_ciR512
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 22112396-22113172  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os02g0575900						
					
						Parent gene annotation
						
							Exo70 exocyst complex subunit family protein. (Os02t0575900-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0575900_circ_g.1 Os02g0575900_circ_g.3 						
					
						Support reads
						96/6
					
						Tissues
						root/root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0575900-01:1

General Information
CircRNA Name	Os02g0575900_circ_g.2
ID in PlantcircBase	osa_circ_015146
Alias	Os_ciR512
Organism	Oryza sativa
Position	chr2: 22112396-22113172 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, find_circ
Parent gene	Os02g0575900
Parent gene annotation	Exo70 exocyst complex subunit family protein. (Os02t0575900-01)
Parent gene strand	+
Alternative splicing	Os02g0575900_circ_g.1 Os02g0575900_circ_g.3
Support reads	96/6
Tissues	root/root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0575900-01:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATATCAGCAACTCCTCCG
AGGAGCTTTCGATCGACACTACTCCGAACTTGCAAGgatggaggtggatacaaaggaatcagag
ataccaagacagaggacagaaaatgaccgaaagattagtgcccggatcaaaagaagtcatcaag
ctcgcagg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 179
Transcript exons: 22112396-22112487,22113086-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGAGATGACATTGCAAGCATCATCACTGAGGGCGGATA
TCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG
Transcript length: 188
Transcript exons: 22112396-22112526,22113116-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC
GCGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG
Transcript length: 193
Transcript exons: 22112396-22112527,22113112-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC
GCGTAGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAA
G
Transcript length: 233
Transcript exons: 22112396-22112510,22113055-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGTTTTATTAACAT
CCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATATCAGCAACTC
CTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG
Transcript length: 238
Transcript exons: 22112396-22112466,22113006-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCAATCAAGCATCTCTTGAAGATGGACCAGACAAAAGATTGGCATGCACTGGTTTTATT
AACATCCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATATCAGC
AACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG
Transcript length: 243
Transcript exons: 22112396-22112452,22112987-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGCAACGGT
AGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGACAAAAGATTGGCATGCACTGGTT
TTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATA
TCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG
Transcript length: 250
Transcript exons: 22112396-22112508,22113036-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAAAAGATTGGCATGC
ACTGGTTTTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGG
GCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG
Transcript length: 281
Transcript exons: 22112396-22112515,22112984-22113084,22113113-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCACACCAACG
GTAGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGACAAAAGATTGGCATGCACTGG
TTTTATTAACATCCAATCCGTTTCTGTCTGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCG
ATCGACACTACTCCGAACTTGCAAG
Transcript length: 777
Transcript exons: 22112396-22113172
GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC
GCGTCCACGGGAACGTTCATTTCGCCTCCATATGCCCTCCACCGGTGTCTTGGCTGGAATTGAA
GCACAATATGGAGGTTAAGCTAGACTTAAATCTTGATGACATAGAGAAATCTATTGTCATTCCA
AGATGCCAAGAGATGGACACCTCTGGTAACCCAGACAAGGTGGACAAATACCTCGTCGCCGCCA
AGAACCTTACACGAATACTGAACTTGGAGCACCCTGTCCTAACCGAAACTGGACATCTCCGTGA
CCGTGCAAGATCACTCCACGGCACCACCATCTCTTCCATTATCACGGAGTTTTGCTACCTCAAA
GTCTGGAGGGTTAGTCCACTAAGGCGTCTGGGCTACTTGCCAGGACCCATCTGGGAGTCCTCCG
TCAGATCTACCTTTAATGAGTCAATCTCAGCAACGGTGTCGTCGAGCTCCTCTAGTTCCTTCAC
CTGCAGTGGTAGCACCAACGGTAGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGAC
AAAAGATTGGCATGCACTGGTTTTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAA
GCATCATCACTGAGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGA
ACTTGCAAG
						
					

						Genomic sequence
						
							GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT
AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC
GCGTCCACGGGAACGTTCATTTCGCCTCCATATGCCCTCCACCGGTGTCTTGGCTGGAATTGAA
GCACAATATGGAGGTTAAGCTAGACTTAAATCTTGATGACATAGAGAAATCTATTGTCATTCCA
AGATGCCAAGAGATGGACACCTCTGGTAACCCAGACAAGGTGGACAAATACCTCGTCGCCGCCA
AGAACCTTACACGAATACTGAACTTGGAGCACCCTGTCCTAACCGAAACTGGACATCTCCGTGA
CCGTGCAAGATCACTCCACGGCACCACCATCTCTTCCATTATCACGGAGTTTTGCTACCTCAAA
GTCTGGAGGGTTAGTCCACTAAGGCGTCTGGGCTACTTGCCAGGACCCATCTGGGAGTCCTCCG
TCAGATCTACCTTTAATGAGTCAATCTCAGCAACGGTGTCGTCGAGCTCCTCTAGTTCCTTCAC
CTGCAGTGGTAGCACCAACGGTAGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGAC
AAAAGATTGGCATGCACTGGTTTTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAA
GCATCATCACTGAGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGA
ACTTGCAAG
						
					

			
		

Sequences
Splice junction sequence	CCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATATCAGCAACTCCTCCG AGGAGCTTTCGATCGACACTACTCCGAACTTGCAAGgatggaggtggatacaaaggaatcagag ataccaagacagaggacagaaaatgaccgaaagattagtgcccggatcaaaagaagtcatcaag ctcgcagg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 179 Transcript exons: 22112396-22112487,22113086-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGAGATGACATTGCAAGCATCATCACTGAGGGCGGATA TCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG Transcript length: 188 Transcript exons: 22112396-22112526,22113116-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC GCGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG Transcript length: 193 Transcript exons: 22112396-22112527,22113112-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC GCGTAGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAA G Transcript length: 233 Transcript exons: 22112396-22112510,22113055-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGTTTTATTAACAT CCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATATCAGCAACTC CTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG Transcript length: 238 Transcript exons: 22112396-22112466,22113006-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCAATCAAGCATCTCTTGAAGATGGACCAGACAAAAGATTGGCATGCACTGGTTTTATT AACATCCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATATCAGC AACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG Transcript length: 243 Transcript exons: 22112396-22112452,22112987-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGCAACGGT AGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGACAAAAGATTGGCATGCACTGGTT TTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGGGCGGATA TCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG Transcript length: 250 Transcript exons: 22112396-22112508,22113036-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAAAAGATTGGCATGC ACTGGTTTTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAAGCATCATCACTGAGG GCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGAACTTGCAAG Transcript length: 281 Transcript exons: 22112396-22112515,22112984-22113084,22113113-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCACACCAACG GTAGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGACAAAAGATTGGCATGCACTGG TTTTATTAACATCCAATCCGTTTCTGTCTGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCG ATCGACACTACTCCGAACTTGCAAG Transcript length: 777 Transcript exons: 22112396-22113172 GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC GCGTCCACGGGAACGTTCATTTCGCCTCCATATGCCCTCCACCGGTGTCTTGGCTGGAATTGAA GCACAATATGGAGGTTAAGCTAGACTTAAATCTTGATGACATAGAGAAATCTATTGTCATTCCA AGATGCCAAGAGATGGACACCTCTGGTAACCCAGACAAGGTGGACAAATACCTCGTCGCCGCCA AGAACCTTACACGAATACTGAACTTGGAGCACCCTGTCCTAACCGAAACTGGACATCTCCGTGA CCGTGCAAGATCACTCCACGGCACCACCATCTCTTCCATTATCACGGAGTTTTGCTACCTCAAA GTCTGGAGGGTTAGTCCACTAAGGCGTCTGGGCTACTTGCCAGGACCCATCTGGGAGTCCTCCG TCAGATCTACCTTTAATGAGTCAATCTCAGCAACGGTGTCGTCGAGCTCCTCTAGTTCCTTCAC CTGCAGTGGTAGCACCAACGGTAGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGAC AAAAGATTGGCATGCACTGGTTTTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAA GCATCATCACTGAGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGA ACTTGCAAG
Genomic sequence	GATGGAGGTGGATACAAAGGAATCAGAGATACCAAGACAGAGGACAGAAAATGACCGAAAGATT AGTGCCCGGATCAAAAGAAGTCATCAAGCTCGCAGGAGGCAACGGTACGAGGACCAGGAAGACC GCGTCCACGGGAACGTTCATTTCGCCTCCATATGCCCTCCACCGGTGTCTTGGCTGGAATTGAA GCACAATATGGAGGTTAAGCTAGACTTAAATCTTGATGACATAGAGAAATCTATTGTCATTCCA AGATGCCAAGAGATGGACACCTCTGGTAACCCAGACAAGGTGGACAAATACCTCGTCGCCGCCA AGAACCTTACACGAATACTGAACTTGGAGCACCCTGTCCTAACCGAAACTGGACATCTCCGTGA CCGTGCAAGATCACTCCACGGCACCACCATCTCTTCCATTATCACGGAGTTTTGCTACCTCAAA GTCTGGAGGGTTAGTCCACTAAGGCGTCTGGGCTACTTGCCAGGACCCATCTGGGAGTCCTCCG TCAGATCTACCTTTAATGAGTCAATCTCAGCAACGGTGTCGTCGAGCTCCTCTAGTTCCTTCAC CTGCAGTGGTAGCACCAACGGTAGCAGTGATAATAATCAAGCATCTCTTGAAGATGGACCAGAC AAAAGATTGGCATGCACTGGTTTTATTAACATCCAATCCGTTTCTGTCTTAGATGACATTGCAA GCATCATCACTGAGGGCGGATATCAGCAACTCCTCCGAGGAGCTTTCGATCGACACTACTCCGA ACTTGCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011900 						
					
						PMCS
						0.461132561

Conservation Information
Conserved circRNAs	osi_circ_011900
PMCS	0.461132561

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							22113089-22112583(+)
						
						Potential amino acid sequence
						
							MTLQASSLRADISNSSEELSIDTTPNLQGWRWIQRNQRYQDRGQKMTERLVPGSKEVIKLAGGN
GTRTRKTASTGTFISPPYALHRCLGWN*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	22113089-22112583(+)
Potential amino acid sequence	MTLQASSLRADISNSSEELSIDTTPNLQGWRWIQRNQRYQDRGQKMTERLVPGSKEVIKLAGGN GTRTRKTASTGTFISPPYALHRCLGWN*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0575900_circ_g.2

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