Detail information of BGIOSGA031636_circ_g.1


General Information
CircRNA Name BGIOSGA031636_circ_g.1
ID in PlantcircBase osi_circ_008555
Alias Chr10:20522037_20523504(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17555551-17557018  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA031636
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031636-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTCATCATCCAGATGTCCATCTGATAGTACTTCTGTTGCATAGGCCCTATATAGTAGCTTGA
GATCATCAGCCCTCCTATCATGATCACTCTCTCCACccttcatgcatcttactagcaagttccg
gatcaaactgtaactcttcacagatattttggaggaatgctgctttgctaggggccgcagccaa
ctcactat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCATGCATCTTACTAGCAAGTTCCGGATCAAACTGTAACTCTTCACAGATATTTTGGAGGA
ATGCTGCTTTGCTAGGGGCCGCAGCCAACTCACTATTAAATGATTTAGCAAGTCTCTTTCTGTA
TACTTGAGCTTTGACATCTGACATGATTGATTCTGCTTCACGCTTGCCCAGTCCAAATATATTC
CTCAGTTGATTCAAAGGAGCGAGCTGAATTATTGTAATCAGATTAAAAGGCTTCTATTAAGATG
CTATCTTGATACCTTATAAACTTAGATTCAGGGGTCATAATCCATGCACCAAATATAAGATGAA
CTAATAACAACCAAATTTGAACAGCAAGGATATACTCCCTCCATATTTTAATGTATGACGCCGT
TGACTTTTTGACAAACATTTGACCTTTCGTCTTATTTAAAAAAATTATGTAATTATAATTTATT
GTATTGTGACTTGATTTATCATCAAATGTTCTTTAAGCATGACATGAGTATTTTTATATTTGCA
TAAAATTTTTGAATAAGACGAGTGGTCAAACGTTGGTTAAAAAGTCAACGGTGTCATACATTAA
AATATGGAGGGAGTACTTGCTAGTACCATTTACAGAACAATAATGGAACACCTCCAACCCAAAA
TATAACTTCTAGCCTTCAAAATTTGTCTCAAAATATAACAACTTCTCCAACTAATTTCACCAAC
TTTCTTAATACCCGTGTCCAACCCTAAAACTCCTTGTATTTTGGGATAGAGGTAGCACATGTTA
TTACACAACCAACTGGGTATAGTTAATCAGTCTCACCATGAGAATTTTTGTTGAGTACTTAGAC
CAACAATTTTCAAGAAGTGATCTGAACCAAGTTGACGATACAGGAGAGTAGTGTCCATGTAGAT
TGAAGACACTGAACCAATGTTACATAATTCACAACTGTCATCTGGCAATAAGAATGGTTTATTA
TGCTTTTTCCAAATGACACTTCGGTTATGGCAAGAACCAGATTGTCTCGGATCAGCTTCTTGCT
CTGCTTTTCAAGGGTTAACAATACTGGCTTTTGCTAAGATCTTGATACACTAAATAGATGCACA
ATTAATCTTCTCCTAGTTTTTAACAACAGGTGGCAGACTGTTTTTCGTGCATTCAGGATATGTT
ATGTTCCAACTAAAACACCATTTATAAATACTGCCGTAAACAGCAGTTCCAGTGGCATCAGGAA
TAACAGTACAAGGTACAGGATCTAGACTGCAGAGTTAAATGAGTTAGGTTTGCCACCATTGATT
GGCAGCATTCCAAAGCAGCACCGGTGTACTTACATCAAGATGTTTAGCAATAAAGTGGGATTAT
AACAAGAGGATGCATGGAATCACCTTCTCATCATCCAGATGTCCATCTGATAGTACTTCTGTTG
CATAGGCCCTATATAGTAGCTTGAGATCATCAGCCCTCCTATCATGATCACTCTCTCCAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021