Detail information of Os11g0479232_circ_g.1


General Information
CircRNA Name Os11g0479232_circ_g.1
ID in PlantcircBase osa_circ_009346
Alias NA
Organism Oryza sativa
Position chr11: 16769526-16771768  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os11g0479232
Parent gene annotation Similar to Gpi16 subunit, GPI transamidase component family prot
ein, expressed. (Os11t0479232-01)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   CC-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCTTGTATCACTATCATCATGTTGTTGTTTTGGGTGCTGCATTACTACACTACTATTGTGGT
TATAATCGACTTCTCAGATTTATAAATTTCAACTCAgtaattttactactttgttcatttggtt
accttttcacaatgccctgagttcatgacttcttgtgttctttgatctggttggtgatattgtt
tacttgga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 2243
Transcript exons: 16769526-16771768
GTAATTTTACTACTTTGTTCATTTGGTTACCTTTTCACAATGCCCTGAGTTCATGACTTCTTGT
GTTCTTTGATCTGGTTGGTGATATTGTTTACTTGGATGTTCGATCTGAAATATAAAATTACAAG
TTAGTGCTCTATTCGCACAACAATTAGTATCATGCGGATGGACAATGGCAGTATTTTGCTTATG
ACTGGAACATAGATTTAGTGTTCTACTCACGTATGAAAGGGGTATGAGTTAGGATGAGTTTTTT
CAGGTGTTAAGACAACTCACACTATGAATTGCACAAGCAATATTCATACTTATATGAAGATTAT
ATTTTATGCAGGATGTACAGAGAAAAAAAACATTTGGTTTATTTGGTATTGCCTAGTAATAATT
TAATGATCTTGATAAATTTAGTGTTCTCCAAGAGTTCTTTTGTTTTAGCATTTGGTGAGAGTTC
ATAAATTTGCTATGGAAAAGTCAGCAGATTAATATAGTTATCAATTGTTCTGTTTACTAGCTGA
AGTGCTGAACCATATTACACTGCACTATCTTTCTTATTTTCGACTAGAGTGCTTCTAGGATATT
TTATAGTTTGTGCTAGATAATGACTTCTCAGAATTCATATAAGATAGAAATAAATCAATGTGAT
GTGCTGAAGAAAACAAAGAGAAGATTCCTTCTATGCAATCGAATGTTGTCTTGATCCCTTGTCC
GCTATTGAAAAACATTTGCCATCCTTATATGCCACTGGAATTCAATTTTCATCCCTTGTGGGTT
GCCAGCTGTCCATGTCCTGTCACCATGCTGTTAACTGAACAAGGAAAATATCAAAACATGTCTT
CCTCTGCCGCCACCTCATTCCCCACCTTGCCTCCTGCTATTGTGCCGGCTGCCGTCTGAGCCCT
GTTTTCTGCCCCCAATCTCCGCCAAGTAGATCACTGCTGTCACTGAGATGGATTCTTGGATGCA
ACACGGCCCATCAATCTCTGCCTGTGCATTCCTTTGTCCTTTCTGCCACTCCCAAACCTTTCAC
TCTTACTTTGGACTGAGCAGACAGCATAAGTCAACAAAAAAGAAATCCTCAAGGCCCCTTTCTC
ATCCACAGTGTGGATCATGCCAAAATGACAAATTATACTGATTGTACCCAAATCAGCTGGATTC
TCATCATTAGCTATGTCCTGACAAGGCAGAGATTATTCATGAAGTTCTTCACTCCTATACATGC
CGGTAAACATCTAAAGAACCACAAACTCTAGGCTTGTGCAGGTTCACAAAAGTGCTGGGACATC
TTGACACTACTTCCACTAGCATCAACCTCCACCCGTCCACCAAGCTGCTCCTCTGCAGCCAGGA
GCAAGCTGGACTTAAGTTCAGCCTGTCAAGGGCATGTCCTCTTTATCTCTATAGCTACCTGAGG
TAAGTCAACAGAAGAAGGCAACAGTACCTGTTAGAAAAAACTAACATATCCTTTTTAAGGGGTT
ATGGCAACTTATGTAATGGTCCTACAAGAAGTGGCATACAAGAGAAGTTCTCCTGCGGCAAATA
ATTGATTGAGATAACCCTTGATGGCATAGAAGGAATTTAGTTTGAAGAAAACATGGTTTAGAAA
TGCTTGTGTTTGGGTGATTACATTATTCGCTGCTTTAACAGATACATGCTGTTTTAAACAATAC
ATGGTCTGGCAAATATAAAGTTGACCATTTAATTTTGTAATAAATAGGAAACAATTATAGAATT
ACACCTTTCTCTGGTATCTGTTCAATCAATTCTTGTCTTCTTTTGATTTGATTTGAACCATTCT
CTCTGGATTCTGGAGTTACATTTCAATATAGCCATTGTGGAGCGGAGTTTCATTAGGTGTAATT
TTCAGGTTGTTTTTTCTTCAGTTCTCTTGTCTCAGTTTTCAAGACTATCCTTGTGTTTTGATGT
AGCGCAGGAAAAATCAGTTTATAATAGCTTGCCTGGCCAAAAATTCACAAGTATTGGTTATTAT
GTTGTGGCATTGAGCCATCCATCTGTTGCTTCTGGCACTGGATATCAAGAATAAAATTATTTTT
GCTGCACCATTGGCCCTATCATCTGATCTTCTGTAGTTCTTGATCTTCATACACTTTCTACACA
TGAACAACTTTTTAGTACATACCGTTTGTTACGGCTTGTATCACTATCATCATGTTGTTGTTTT
GGGTGCTGCATTACTACACTACTATTGTGGTTATAATCGACTTCTCAGATTTATAAATTTCAAC
TCA

Genomic sequence GTAATTTTACTACTTTGTTCATTTGGTTACCTTTTCACAATGCCCTGAGTTCATGACTTCTTGT
GTTCTTTGATCTGGTTGGTGATATTGTTTACTTGGATGTTCGATCTGAAATATAAAATTACAAG
TTAGTGCTCTATTCGCACAACAATTAGTATCATGCGGATGGACAATGGCAGTATTTTGCTTATG
ACTGGAACATAGATTTAGTGTTCTACTCACGTATGAAAGGGGTATGAGTTAGGATGAGTTTTTT
CAGGTGTTAAGACAACTCACACTATGAATTGCACAAGCAATATTCATACTTATATGAAGATTAT
ATTTTATGCAGGATGTACAGAGAAAAAAAACATTTGGTTTATTTGGTATTGCCTAGTAATAATT
TAATGATCTTGATAAATTTAGTGTTCTCCAAGAGTTCTTTTGTTTTAGCATTTGGTGAGAGTTC
ATAAATTTGCTATGGAAAAGTCAGCAGATTAATATAGTTATCAATTGTTCTGTTTACTAGCTGA
AGTGCTGAACCATATTACACTGCACTATCTTTCTTATTTTCGACTAGAGTGCTTCTAGGATATT
TTATAGTTTGTGCTAGATAATGACTTCTCAGAATTCATATAAGATAGAAATAAATCAATGTGAT
GTGCTGAAGAAAACAAAGAGAAGATTCCTTCTATGCAATCGAATGTTGTCTTGATCCCTTGTCC
GCTATTGAAAAACATTTGCCATCCTTATATGCCACTGGAATTCAATTTTCATCCCTTGTGGGTT
GCCAGCTGTCCATGTCCTGTCACCATGCTGTTAACTGAACAAGGAAAATATCAAAACATGTCTT
CCTCTGCCGCCACCTCATTCCCCACCTTGCCTCCTGCTATTGTGCCGGCTGCCGTCTGAGCCCT
GTTTTCTGCCCCCAATCTCCGCCAAGTAGATCACTGCTGTCACTGAGATGGATTCTTGGATGCA
ACACGGCCCATCAATCTCTGCCTGTGCATTCCTTTGTCCTTTCTGCCACTCCCAAACCTTTCAC
TCTTACTTTGGACTGAGCAGACAGCATAAGTCAACAAAAAAGAAATCCTCAAGGCCCCTTTCTC
ATCCACAGTGTGGATCATGCCAAAATGACAAATTATACTGATTGTACCCAAATCAGCTGGATTC
TCATCATTAGCTATGTCCTGACAAGGCAGAGATTATTCATGAAGTTCTTCACTCCTATACATGC
CGGTAAACATCTAAAGAACCACAAACTCTAGGCTTGTGCAGGTTCACAAAAGTGCTGGGACATC
TTGACACTACTTCCACTAGCATCAACCTCCACCCGTCCACCAAGCTGCTCCTCTGCAGCCAGGA
GCAAGCTGGACTTAAGTTCAGCCTGTCAAGGGCATGTCCTCTTTATCTCTATAGCTACCTGAGG
TAAGTCAACAGAAGAAGGCAACAGTACCTGTTAGAAAAAACTAACATATCCTTTTTAAGGGGTT
ATGGCAACTTATGTAATGGTCCTACAAGAAGTGGCATACAAGAGAAGTTCTCCTGCGGCAAATA
ATTGATTGAGATAACCCTTGATGGCATAGAAGGAATTTAGTTTGAAGAAAACATGGTTTAGAAA
TGCTTGTGTTTGGGTGATTACATTATTCGCTGCTTTAACAGATACATGCTGTTTTAAACAATAC
ATGGTCTGGCAAATATAAAGTTGACCATTTAATTTTGTAATAAATAGGAAACAATTATAGAATT
ACACCTTTCTCTGGTATCTGTTCAATCAATTCTTGTCTTCTTTTGATTTGATTTGAACCATTCT
CTCTGGATTCTGGAGTTACATTTCAATATAGCCATTGTGGAGCGGAGTTTCATTAGGTGTAATT
TTCAGGTTGTTTTTTCTTCAGTTCTCTTGTCTCAGTTTTCAAGACTATCCTTGTGTTTTGATGT
AGCGCAGGAAAAATCAGTTTATAATAGCTTGCCTGGCCAAAAATTCACAAGTATTGGTTATTAT
GTTGTGGCATTGAGCCATCCATCTGTTGCTTCTGGCACTGGATATCAAGAATAAAATTATTTTT
GCTGCACCATTGGCCCTATCATCTGATCTTCTGTAGTTCTTGATCTTCATACACTTTCTACACA
TGAACAACTTTTTAGTACATACCGTTTGTTACGGCTTGTATCACTATCATCATGTTGTTGTTTT
GGGTGCTGCATTACTACACTACTATTGTGGTTATAATCGACTTCTCAGATTTATAAATTTCAAC
TCA
Conservation Information
Conserved circRNAs NA
PMCS 0.206630941
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017