Detail information of BGIOSGA015188_circ_ig.3


General Information
CircRNA Name BGIOSGA015188_circ_ig.3
ID in PlantcircBase osi_circ_014304
Alias Chr04:19816891_19818606(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17123591-17124892  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATTGTCAGTGGAACCTACTATTCATTAGTTAGTGGGCAGACTGACTGTTGGTAATAGACTTT
GCAACCATTGCATTTTTTTTGCTATTGTAATTTCTGagcctgtcacagttcaatcttcccgtca
cagttccaaatactcaaggactaggaatccaaaatgaaccaggaactgctcctgtcaacacatc
aagccttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGCCTGTCACAGTTCAATCTTCCCGTCACAGTTCCAAATACTCAAGGACTAGGAATCCAAAATG
AACCAGGAACTGCTCCTGTCAACACATCAAGCCTTGGAGGCAGTAAAGGTGTTCCTGCAAAAGA
CATCAAATCTGCTGTGACAAATGATGTACTGAAGCTAAATGGAACCACTGCTTTAGCTGTTTCT
GATGCTGATGTATATGATCCTGATCAGCCTCTCTGGAACAACGAACACCCTGATGCATCTGCTG
GTTTTGCACATACTGATGGAGTATGGAATGCTGAATCCTTGGGCTATGAAGCAGCTCGGGAGCA
GGGAAATCAGGTTCTTGCAGCTGATAGTTCACAGAACTCGAAATCTTCTGTTTGGGGACGAATA
GCATCAAAAAAACTAGGGCATGGCAAGACAGCTAATGCTACTTCAACTAGCGCCACTGGAAACA
AAAGAAATGAAAGTTATGATGAAATGGCTCCTAGCACTGTCCATGTCAATCCTGCTTCTGCTAA
AGACAGTAATGGTCAATCCAATTCGAGAATATTTGGAGATGTGGGCCGGCAAAGTAACCGGGCT
TCTCATAAAGCATCCCGGACACTTTATGTAAATGGTATTCCTCTAGAAAGCAATAGATGGGAGG
CCCTTCTTTCGCACTTCCAGAAATTTGGGCAGGTGATAGATATCTATATTCCATCTAACAGTGA
AAAAGCTTTCGTTCAATTCTCTAAAAGAGAAGAGGCTGAAGCTGCCCTTAAAGCTCCAGACGCT
GTAATGGGCAACCGCTTTATAAAGCTATGGTGGGCCAATAGAGATAGGATTCCTGATGAGGTAG
AGGGTAGAATCCCAGCAAAATCTTCCCATATGTCTGCTGCCTGGCCAATTCTGTCCCACCTCAG
CCATCTTCTTCCAACCGAGGCAAGGAAAATCTTCAATCTGCAACTCCAAGAGCCAGTTCTGGAT
CTTCTGCTGAAGCATCAGGTCCTGGTACAGGCCATAAAATGCTTCCTGCAAATAGTGTAAAATC
ATTACCTCCTGACACCAAAAGGCAAGAAAGTCTTGAGCTCTTGGAAGAACTTCGTAAAAAGCAG
GAGATCTTAGCTCAGAAGCGTGATGAATTCCGCCGGCAGTTAGAGAAACTGGCAAAGCAAGTAT
GTAACTTTTTCCAAGTATTGGTTGATTCGATATTGTTAATCTCATTACTCACATTGTCAGTGGA
ACCTACTATTCATTAGTTAGTGGGCAGACTGACTGTTGGTAATAGACTTTGCAACCATTGCATT
TTTTTTGCTATTGTAATTTCTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021