Detail information of BGIOSGA001739_circ_g.1


General Information
CircRNA Name BGIOSGA001739_circ_g.1
ID in PlantcircBase osi_circ_009327
Alias Chr01:13190729_13192890(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 14226104-14228266  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA001739
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001739_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGAGCATAAAGATAGATCTATCAGGGCAGGCAGGAAGAACACATGAACAAAGCATACTAGCAT
ATATTCGAGGGATCAAGGCGTGAAAAAAAATTATACcatgactgattgaggtgaacgatattcg
gatattaagatgcatggtgaatctttaagcttaaattgccttcaaggcaaactctaatttgact
aaacatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGACTGATTGAGGTGAACGATATTCGGATATTAAGATGCATGGTGAATCTTTAAGCTTAAAT
TGCCTTCAAGGCAAACTCTAATTTGACTAAACATGAGAATAGAAACAACTTTGGGATCAGACTG
ACGTGCAAATTTTCATCATTCTGAAAATAAATCCATAAAGGATATCTGAGATGAATTGTTCATC
ATTTCCCAAACATGATAGATTCAATAAGGTCAGTGGAAGATGAGCAATCAGGGCCTACTTTATG
ACAATACCTTGGGAAACAGACCTAGATTCAGCAAGGTTACACAGGTACATAAACAGCAAAAGAC
TAGATGGAATATGGATTCAATGTCCATGCTAAGCTTATTTTGTCTTCCGTGATAAGTTCTGACC
CGCAATACTTTCAGAAATAGGGAATAGGAATCTTCCTCAGAAAGCAGTGAAATATCACTAGATC
TCCAAAGAACTGCGGAGGAACAAATCAGACCAGGTTGTCCTCTCAGATCTACTGAGAATGGGAT
CGGACTGACGTGCAAGGTTTAATCACAGGCAGAAGAGATCTACCCTCAGAAACAACCTCTGGAA
TAAGTTTTTCGTCATATCCCTAAAATAGGAGCTAAGCCTTTCAGTAGATGCTCTCAATTCTCGA
GCACATATTCGAAAGCATCAGATAGCAACGCCATCTTAATTTGACCAAAAAAACTAGGCAGATC
TTTTAAGGGAGAAAATGCAAATAAAGAAAGAGAATTGGATCAGAACGGCAAATCAGTTCTTTTG
CAGCACTGGGTGAGCTCAAGGCTCATCCTCAGAAACAGCCTCTGATATAAATCATCATCTCCAA
AAGAACATGAACAAAGCAAAAACAAAATCCAATTACTTTATAGGTCAACAAACAGGTACCACTC
CCCCCTCAGATCTAAAATAGGTTCTACTTGCAAACAGCAATCTACGAAGTGGTTTTGGATCAGA
ACGGCAAATCAGTTCTTTGCAGCACTGGGAGAGCCATTGGCCCGTCCTCAGAAACAGCCTCTGA
TACAAATCATCATCTCCAAAAACAAAATCCTACAACTAATCTTTCACAGATCTAGCCTTCCACC
ATAGGAAAGAGCCCAGATCCAGGTGTTTAACTTCCCATGAGCCCATAGGAGAAGCAACATTAGG
CGATTGTTTCTAGAAGGCACGGTAAATAAAGCCTAAAGCCTGAAGGAATCACATCTAAATCTTG
ATGTGTTAAGAGATAAAATCTCCTCAGAAACCCAAACCAAGAACCATGTGACATGTGACGGATA
AGGGGTTCTTGAAGTTCATGAACAGTGGTAGACACGTCACACGTCCCTGTCCTTGCATCAAGAA
CCAATATCCGATTATTTTTAATATATCAAAAAAATATATAATAATATTAACAACAACATATGCC
AAAATGCCCTTTGGACTTATTATTCTTGGGGGGAGGAGATGGGCCTCTGATGGGCTACACCACA
GACCACACAAACAGCAGGTGGATAAGACTAGACTAGAAAAGTAGAAAACCTAACATGTCCTCAT
AGGAAATTACCACATCAGCGCAAAAGTACTGGGAAAGGATAAACGGTATGGCAGAGAACAATCA
CCCAGATCTACAGAAAATACGGAAACAGGGTTTTCTTCTCTCTTTTTTTTTCGCCAAAAAAACT
GAACCTTTTTACTCCAAGATCTATATTTTTTTTGCCCAAAAAAGGCTTCTTTATTCCCAGATCT
ATAGTTTCCTGAGTGGTAAAAACAACTCACAAAAACAAAAATAAGTTTTGACCGTCTACAGAAA
TCGATATGCAAAAAAAAAAAAAACGACCCAAAAATCTCGACCTTCTAGAAAGGTTTTTTGAGAG
GAAAAGTCTTCAAAACTAAGCTGATACATCTACTGATGTGAGAGAACGCTATTGTATTCAAAAC
TAAGCAGATACATCTACTGGAGTATTTTAGGGACAAAGGTGCTGAACAGATCTGAGAATAGAAC
TACTTTTCCAGATTTGTGCAAGAGAAAATTAGCAAGAAAACGCGCAGGAAGCTGAAGAATTTCA
TACTAATCGTAACAGTAGAGCATAAAGATAGATCTATCAGGGCAGGCAGGAAGAACACATGAAC
AAAGCATACTAGCATATATTCGAGGGATCAAGGCGTGAAAAAAAATTATAC
Conservation Information
Conserved circRNAs osa_circ_001615
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021