Detail information of BGIOSGA001214_circ_igg.1


General Information
CircRNA Name BGIOSGA001214_circ_igg.1
ID in PlantcircBase osi_circ_010321
Alias Chr01:25581546_25586469(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr1: 27372516-27377440  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGCTGTGCTTCCACCATCATCGGAAACAGGAAGTACATGTGCAACTCGAGTCGTCACTTTCT
TCAGCTCTTCTACAACACCATTAAAAGCGGTTCCTCcctaacatttgagaactgagatttcagc
atacagactctacattttctgttagaagatcaggttccacgaaacgcctatccgatattagact
ggtcaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTAACATTTGAGAACTGAGATTTCAGCATACAGACTCTACATTTTCTGTTAGAAGATCAGGTT
CCACGAAACGCCTATCCGATATTAGACTGGTCAGGGCTTGAATCAATGAATGCGGATCAAAAAT
AATGCCCGTCTTTCCATCGTGTATAGAGTCCACAGTAACCTGCAATATACTTCATAAGTTAGCA
CATTAAAACGACAATCTCAATACTGTTTATGCACAAGCTACAATACAGAAGAACGTGGACCAGT
ATCGCGTACTTCTGGAATACCGACCTACACATTGAGTTTTCATATTTATCTTGTGTAAATAACA
GTGTGCCTTTTTTCTAACATGTAATGGATAAATGCCTAAGTATGCAAAAGTAAGCTTGTTTAAC
CAAGGCTACAGAGCTCAATGTGACCCACCGTGCAAAATCTGCAATTATTGTAGTTTTATCATGT
ACTCCCTCCGTTTCAGGTTATAAGACGTTTTGACTTTGGTCGAAGTCAAACTACTTCAAGTTTA
ACTAAGTTTATAGACAAAATTAGTAATATTTATAGTACCAAATTAGTTTTATTAAATCAATAAT
TGAATATATTTTCATAACAAATTTGTCTTGGGTTGAAAATATTTTTATTTTTTTCTACAAATTT
AGTTAAACTTGAAACAGTACTTTGACCAAAGTCAAAACGTCTTATAACCTGAAACGGAGGAAGT
AGTAATTAATAAGCTGATGCTAGATATCCTCTTTCATTGGGGATGAAATGACGGAAGTAACATG
GTATCGCACACAGAAAAGCCAACTAGGAAAGAAGCGTTAAAATTTCGGAGCATCTCGACCATTC
ATTTTCTTTTTCGTGATTGTTTCTCAGTAAAAGACCTAGAATCTAAGTATTCATGTAACCTTTG
GCTGTATATATCCATTCATGGATATAGAGGCTGGATTTTCTATCCATTCTCGAAAATATTACAC
AGTTAAGGACTCGATGGATAACTATAACATTTTTCCACACATTTTACACTTAATGATCACTGTT
TTATCAAACACAAACACTTACCACATGAAAGATTCCTTTAGAAGACAAGTTTTTTATATCCAAA
GGAATTTGGCCTCCTTTTGGTACCAATAAAGCATTCACATAGTCTTTGGGCTGCACAAAATGAA
AAAGAAGCTGTCAGATGGAAAATCTTCACACAGATAATGTTAAGGGGCAGGGGCATATGTACAT
CTTTAACTGAATCATTCAAGATGTGGACCAGGGGACGCTGATCTGTGGGATATTCCCATCCTCT
AAAGCTAGTAAATGATATGATGCATAATTCCTCCAATCATTAGCTGAAAATCTGTTCAAAGGCA
CAGTCACCGAACTTACAAGATTCTTTAGACTTTTGTCAGGATATCCATATGTACGGTTTAGAGA
ATCAGTAATGGCAGTCACAAAGCCAGAAGCAGGCAACCCAGTTGTTTCTCTGTCATGCGACCCA
TTCAAAAGAAGTACCTAGATTCAGAATAAATAATTTTAGACAAAAGCACCAATAGCCACAAGCA
TGATCAACCAAGGGGCTAAAAACCAAGAAAAACAACATTTTATGTGAAGAAAAACTCCCTTCAC
ACATCAAATAACCCCATGAGTCCACTACTATGGAGGTGAATCCACTATTCTAGGTTGCTATTAA
ACCCATTCTAGCATAATGAAATCAAGAGCATGAAGCAAGTCAATATGGTTTAACAAGAATGTCA
GGTCTTAGTAATGCTTTTATTTACATGATGGAATCAAGAAAAAATGAATCAACACAAATACAGA
ACATTGTATTAAAGCATATGAAAACAAGACAATATTTTTTTAACATGACTACCTTCGGAATGGA
TCTTGATGCTATAGTTTCACCAATGCCACGCAATACCTGCACAGCCTTAAATTTCAGAAGAAGA
CAAGCTGATGTGGAAAACAGGCACAGGTAAAAAAGCTTAAAGTCAGTATCAGTAATCAGATGTG
CACGGCACCCATGTTTGCTTAGTACTGCATGTAGTATAAAAATGAACATATCTGATATCATGTT
AAGACTTAAGACCATCAAGTCAATACAATTATGTACAAACAAAAAATAGAGCAGCATGGTTACC
AATGATGGACAGACTGATGTAAAGAGTGATCCCATAGCATATACAATGCAGTCCACCTTACTTA
ACTGCTCCAAAACTGTACGGTTAGCTTCAGGAAATACCTGCATTGCAAGGTTAGTAGGAACAGT
TAGGAGTTTTAAAACATAAAAAAGGGTTGTTTACATATATACTGTTGTGAAGTGGCTAATTTGA
TACATGTCATCCCAATATGCTTACATGGTTATAAGTGCACACCCTTTTAAGCCCATGATATTCA
CAAAACATAACAGCCTACTATATGAAGGAGTTGTCCCTTCTCATGCCTACTAAGCTTAGAAGGA
GTAAGCGTACTCTTTAAAGAATTAAGTTAACCAAGAGCTAAAAACCCACTATTGATGAATGGTA
TAGTTCACAATGTTGTAAGTAACACCATGAGACTGATTAGATAAGCATGATAAATGGAAATATA
GACTACATTTTCTGATTATTATATCATGATCATTATTAAGAACATGAAGATGTGTGGTATTCAA
GAAAAAAAAATTTTACGCTGAGAAATTAAAGTAGAAAGGCTGAATCAATTCTTAGAGGGACTAG
TAGCTTTTGTTTTAACAAAAATCAAAGTCTTACCCAACCAAGAATTCATGATAGATGTGCAATG
AAAGGTTCAGTCTAGGTGGTTACGATAAAATGAATGTACTAACCTCATGCAACAGGTTGCTGCC
TTCACTTGACATGTAAAAGACACGCTTAATCCTTGAAGGAAGTGCACTACATGAATTACAATCC
TTTTCCAAAAATAAAAAGCAAAATAAAAAATAAATCAGTGACAGATAAACAAATATTATAAGAA
ATCAACAAGCATGCCCAGGTAAAAAGGAGAAAAACATAGATTCAAGATAACATGTGAATCAATG
ACAACCATGCCATGAACAAAAACGGAAATGAAGCAAAAATAGCCGATATTGTCATAACGAAATG
GAGTTTGCACAATTGTAAATATCAGTCCACCAGAGAAGGATATGGCAACACAATTTTAAAGGTA
GGAGTAACATTTTTTTTTTCTTCTATAGCTTCTTTTATAAGATAAAACATAAAAAAGTTGTTCC
ATAGAACATATTGAAGTGGCCCCAGAAATGCTTTGGAGCCTTCATCGCAATGATGTTACATAGA
TCATATTAACTACTATTGGGAGTATGCTGAAATGATTTATAGACTGGAGTACCTTGTTAACAAC
TTCTTTACGTCCATTGCTTGGATGTGATATTTCATTTTGACCTCGGATGATAGTTCCATCCTGA
AAATGGAATAATGTCCAAGATGATTATATGTGATTTTGTAGTAAGGGAATGTTTGTAATAATAG
GAGTAACATTGTAAAACAAAGACAATCATGCCAGTTTTCAGAAGCAAGTTGGAATAATTAAAGA
AAGTTTATAAGGGGAGCTAATTAAACTATCAGTGAAATAACAAAATAAATAAATAAATGGAAGC
AATAAAATTAACCAACATAAGAACAAGAAGACCAGATCACCAGAGCAGTCCGAAAAATGAATCT
ACTGGTTTTTTTATTGTGCAACTAAAATACTGATAAGTGATGTTACCCATAGTTCGCATCCCAG
TGTAAGCCTGTCATTTGTGGATATCACTGGAAGAACAAGACTTTCAGCAGGGATCTGTGACACA
CGTGAGAACAAGAAAATCGCAGCATCCAGAGACTGGAAGAATATGCGTGCCCCAGCAAAAAAGA
AATTCCCAATGCTGCAAGAATAAAAAGCTGTAGTCAATAACAGATGTAGGCAAGATGGGAGTAT
TGTTATTATGAGTTGTGACCACAAAAAATGCCCCAATACCAAGAAATAAGTATTGCCACAAAGG
ACATCCCTGTCACGCCATCGAATTGAGAAGTGGCAAGAGACCAACGGGTGACATGTTAAAAGCA
ATCACAAGAATATGATTTACTGCAAATTTCACCTTAAAAGAATCACCTGCCATTGGTGAAGCAA
AACATTTCAGCTGACCGTCGAAGTATCTGCACAAACGAAAAGACTGCAATTATATGTCATGGGC
AAGGAACGACTGCTTGATCATCAGACTGCCCTCTATACCAGGAAAATAAATCTTGGCAAAAAAG
AAAACAGAAGGGGGGGGAGGCGAAAAATCATATTCTCTTCTGTTCTCCAGTCAGAAAACTGTTC
ATTTGAAATTTTCAAAGCAAAATCTTTAAGCAAATTAAAAATATGCTATGAAAAGAAAATACTA
CAGAGGAACTGACCTCATTATGGAAGTAGACTAAAAAGGCACGTATTGTTTCTCTGTATGGCTG
TGAGACACCATCCCACAAAGCGTGCTCTCCTTCTACAATCTGGTACCTGTCAAGTACACAACCT
AACATCACACATCTTTTTTCATACATAAAAAACATCAGCCAGTTACTTGATCCAGTTTGAATGA
ACAAAGGTGAGTTTTGATATGCAATAGACAGACTAATTGCTACCACTCAAGCTTTGCTTCTGAA
GGATCAAGAGGCAAACGGTGCCCAAGCAATGTCCGAACAGAAAGGGCTTCTGAAGTGCTTTCAT
CAGACAATCTCAAGCATCTTGATCTAATGTCACCCACAGCAGGTCCACCTAACATTTAAGAACA
GGTTGGATTTTCACTTACTATACAAATTGTTATCTCAGGTAGCAGGTGGTGTGGCAAGAGATTT
CAACCTACCAAGCACTCGCACAATCTCAGCTGTGCTTCCACCATCATCGGAAACAGGAAGTACA
TGTGCAACTCGAGTCGTCACTTTCTTCAGCTCTTCTACAACACCATTAAAAGCGGTTCCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021