Detail information of AT2G04880_circ_g.2


General Information
CircRNA Name AT2G04880_circ_g.2
ID in PlantcircBase ath_circ_012822
Alias 2:1719200-1719380
Organism Arabidpsis thaliana
Position chr2: 1719200-1719380  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04880
Parent gene annotation WRKY transcription factor 1
Parent gene strand +
Alternative splicing NA
Support reads 1/1/1/4/4/2
Tissues seedling;root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04880.2:1
AT2G04880.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGATGTGAAAACTGATATTTCACAATCAAGTAGGATAACGGGGGACAACACTCACAAGGAT
TATAATAGTCCTACCGCAAAGCGAAGagaaaacatctggatccagtgttcagacacttcgtcaa
accgaaccaccaaagatccatggaggattacatgtttcagttattccaccagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 181
Transcript exons: 1719200-1719380
AGAAAACATCTGGATCCAGTGTTCAGACACTTCGTCAAACCGAACCACCAAAGATCCATGGAGG
ATTACATGTTTCAGTTATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGG
ATAACGGGGGACAACACTCACAAGGATTATAATAGTCCTACCGCAAAGCGAAG

Genomic sequence AGAAAACATCTGGATCCAGTGTTCAGACACTTCGTCAAACCGAACCACCAAAGATCCATGGAGG
ATTACATGTTTCAGTTATTCCACCAGCTGATGATGTGAAAACTGATATTTCACAATCAAGTAGG
ATAACGGGGGACAACACTCACAAGGATTATAATAGTCCTACCGCAAAGCGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.294731989
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020