Plant Circular RNA Database

Detail information of AT1G80910_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT1G80910_circ_g.2
					
						ID in PlantcircBase
						ath_circ_011378
					
						Alias
						1:30401119-30403340
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 30401119-30403340  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT1G80910						
					
						Parent gene annotation
						
							Vacuolar fusion protein CCZ1 homolog B
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT1G80910_circ_g.1 						
					
						Support reads
						2
					
						Tissues
						flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT1G80910.1:8

General Information
CircRNA Name	AT1G80910_circ_g.2
ID in PlantcircBase	ath_circ_011378
Alias	1:30401119-30403340
Organism	Arabidpsis thaliana
Position	chr1: 30401119-30403340 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT1G80910
Parent gene annotation	Vacuolar fusion protein CCZ1 homolog B
Parent gene strand	+
Alternative splicing	AT1G80910_circ_g.1
Support reads	2
Tissues	flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT1G80910.1:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCGCGCGTCTAAACAGAGGTAAAGAGCTTTACATGGCTTTAGAGAAAGCAAGTGAAACTCTTCT
TGATGCTACAGACTCTGTCCAAAGATTCAGCAACAGgtgtttaatgagctcttagaagctatgg
gaatggcgtccatgagctctggtactgaaagccttcgtctttgcgtgtttgacttaagaagagg
ccaacacg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1487
Transcript exons: 30401119-30401324,30401477-30401570,30401666-30401849,30
401931-30402040,30402120-30402215,30402367-30402792,3040
2878-30403033,30403126-30403340
GTGTTTAATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTACTGAAAGCCTTC
GTCTTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAGGAACTGGACAAGATCTTGTT
CTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAGGGCTT
ATCACGTTCACGAGACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATT
CCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGATTGTAGAGAAAAATAAGGA
GATTGAAGCTGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGGAAGTGCACTCTCTCTTT
GTTATGTTTCAAGGGTCAATTAGGGCATTGCTTGAGAAAGAACCAACTGGAGGACTTGTAAGAT
CGCACTTGTATCCATTCATCACAGACTATTTAAATGATCTTTTCGTTGGGAAAAAACAACAGTT
ACCTTCCTTCCGTGACACTTTGAAAGAGCGTGGAACAGTTCAGATGCTAACTTTAGCTAGAGAT
GCGGCACTTGAAGTTCAGTCTCTCGTCGGAGTGCTAGATTCATGTGCTGGGACCGTTCGATGCC
ACTCTGTGATTCTATTTCATGATCTACTGGTGTCAACAACTCTCTCACCTGATGATACCGTCGA
CTTGTTTGCATTTTCTGTCATGAGATTAACCACAAACGCGCTATCATCTGGCACAAGTTCCTGG
TCATATCTACGCAAAGGATCCGGTTCACCTCAAATATCTTCTAGATCTACTACGGTGCCCCCTC
TTGGTTCAGGTGGTACATTGCCTTCGGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCTTT
GCAGCACGATAAGTGGTCGAAGGGGAAAGATGGGTTTCTTGTAACTGATATTTGGGGTTTAGAT
GCCACCCCGACAATTTTGATACAGAAGACACAGGAAAGTTTTTACCTTTTGACTTATCAGTACA
AGAGTCTCACCTTGGTTCTTCTCGTGCCTATCGCTGCAATTGTTAATGGAGAGCTAGACATCTC
ATTCGTGAAGCAGCAAGTTATTGAAAACGCATCGACCAAAATCTTGAAAGTCGAAGAGAAGCTA
TCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTGATA
ATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGGAGTCTTT
GCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGAAAAAAACCGCTCGAAGCAAGAGAAA
GACATGGAAATATGCATTCGAGCGAAGAACAACACATGGGTCATCGCGCGTCTAAACAGAGGTA
AAGAGCTTTACATGGCTTTAGAGAAAGCAAGTGAAACTCTTCTTGATGCTACAGACTCTGTCCA
AAGATTCAGCAACAG
						
					

						Genomic sequence
						
							GTGTTTAATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTACTGAAAGCCTTC
GTCTTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAGGAACTGGACAAGATCTTGTT
CTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAGGGCTT
ATCACGTTCACGAGGTTAGCTACTAGAGATTTTCCTTCTTTACACAGATTTTTCGAGTTCATGG
ATTGATTGATGTTGTCTCATGTTCACATAAATTTTGAGCGTTATTAGCTTTTCCTGTATTGTTG
GGTGTTCCTGAGACGTGGTTTATGGAATATAAACACAGACTTTTCTCCCCGGAGGCAGCTTGTG
AGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGT
CATGGTACAACATTATCAACTCTTTCACTTGTTTTAGCAATTGATTTGCACTTTGTTCATATGC
ATAAAAAGAACAAAATTTGATTTAGACTTTGGTAGATTGTAGAGAAAAATAAGGAGATTGAAGC
TGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGGAAGTGCACTCTCTCTTTGTTATGTTT
CAAGGGTCAATTAGGGCATTGCTTGAGAAAGAACCAACTGGAGGACTTGTAAGATCGCACTTGT
ATCCATTCATCACAGACTATTTAAATGGTAAGCAATAATCACCAAGTCTATAGCCCACAAAATC
CCTGTGTAGTAGCACTTATCAAAAGTTTTTCTATTTTGGGGCAGATCTTTTCGTTGGGAAAAAA
CAACAGTTACCTTCCTTCCGTGACACTTTGAAAGAGCGTGGAACAGTTCAGATGCTAACTTTAG
CTAGAGATGCGGCACTTGAAGTTCAGGTTTGTTTCTCTATCAGAAGATGCGTTTCGAAACAAAA
AAAAAGTTCACTATTTTGAATAGTATTATTTAGATGTACAGTCTCTCGTCGGAGTGCTAGATTC
ATGTGCTGGGACCGTTCGATGCCACTCTGTGATTCTATTTCATGATCTACTGGTGTCAACAACT
CTCTCACCTGTATGTTTTCAAATCCCTCATTCGCATTAATCATATTTGCCAAGATTGTTGAGTC
GTTAAGATTCTTAAATTATCGTGGTCTGTGTAGACTATATTGTTCACTAATACTAAAAGCTTTA
GTCTTTGTCTTCTCTCTCTCTTCTCTTTTCAGGATGATACCGTCGACTTGTTTGCATTTTCTGT
CATGAGATTAACCACAAACGCGCTATCATCTGGCACAAGTTCCTGGTCATATCTACGCAAAGGA
TCCGGTTCACCTCAAATATCTTCTAGATCTACTACGGTGCCCCCTCTTGGTTCAGGTGGTACAT
TGCCTTCGGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCTTTGCAGCACGATAAGTGGTC
GAAGGGGAAAGATGGGTTTCTTGTAACTGATATTTGGGGTTTAGATGCCACCCCGACAATTTTG
ATACAGAAGACACAGGAAAGTTTTTACCTTTTGACTTATCAGTACAAGAGTCTCACCTTGGTTC
TTCTCGTGCCTATCGCTGCAATTGTTAATGGAGAGCTAGACATCTCATTCGTGAAGCAGCAAGT
TATTGAAAACGTTAGCTCATCTCTGTAAACCTGTCTTGCTTCATTGTAAAATCTTTTCAGACTC
CATCCCTTATCATCTCTATGCATTTTTGCAGGCATCGACCAAAATCTTGAAAGTCGAAGAGAAG
CTATCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTG
ATAATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGGTGAG
AGAGAACTTCCATCAATCATATTCATATACTGCGATCTCGTGAGTAGCATAAGCAAGAGTGTAA
CAAAATTGTCTCTGATTTCGTAGGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGA
TACAGAAAAAAACCGCTCGAAGCAAGAGAAAGACATGGAAATATGCATTCGAGCGAAGAACAAC
ACATGGGTCATCGCGCGTCTAAACAGAGGTAAAGAGCTTTACATGGCTTTAGAGAAAGCAAGTG
AAACTCTTCTTGATGCTACAGACTCTGTCCAAAGATTCAGCAACAG
						
					

			
		

Sequences
Splice junction sequence	TCGCGCGTCTAAACAGAGGTAAAGAGCTTTACATGGCTTTAGAGAAAGCAAGTGAAACTCTTCT TGATGCTACAGACTCTGTCCAAAGATTCAGCAACAGgtgtttaatgagctcttagaagctatgg gaatggcgtccatgagctctggtactgaaagccttcgtctttgcgtgtttgacttaagaagagg ccaacacg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1487 Transcript exons: 30401119-30401324,30401477-30401570,30401666-30401849,30 401931-30402040,30402120-30402215,30402367-30402792,3040 2878-30403033,30403126-30403340 GTGTTTAATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTACTGAAAGCCTTC GTCTTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAGGAACTGGACAAGATCTTGTT CTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAGGGCTT ATCACGTTCACGAGACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATT CCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGATTGTAGAGAAAAATAAGGA GATTGAAGCTGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGGAAGTGCACTCTCTCTTT GTTATGTTTCAAGGGTCAATTAGGGCATTGCTTGAGAAAGAACCAACTGGAGGACTTGTAAGAT CGCACTTGTATCCATTCATCACAGACTATTTAAATGATCTTTTCGTTGGGAAAAAACAACAGTT ACCTTCCTTCCGTGACACTTTGAAAGAGCGTGGAACAGTTCAGATGCTAACTTTAGCTAGAGAT GCGGCACTTGAAGTTCAGTCTCTCGTCGGAGTGCTAGATTCATGTGCTGGGACCGTTCGATGCC ACTCTGTGATTCTATTTCATGATCTACTGGTGTCAACAACTCTCTCACCTGATGATACCGTCGA CTTGTTTGCATTTTCTGTCATGAGATTAACCACAAACGCGCTATCATCTGGCACAAGTTCCTGG TCATATCTACGCAAAGGATCCGGTTCACCTCAAATATCTTCTAGATCTACTACGGTGCCCCCTC TTGGTTCAGGTGGTACATTGCCTTCGGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCTTT GCAGCACGATAAGTGGTCGAAGGGGAAAGATGGGTTTCTTGTAACTGATATTTGGGGTTTAGAT GCCACCCCGACAATTTTGATACAGAAGACACAGGAAAGTTTTTACCTTTTGACTTATCAGTACA AGAGTCTCACCTTGGTTCTTCTCGTGCCTATCGCTGCAATTGTTAATGGAGAGCTAGACATCTC ATTCGTGAAGCAGCAAGTTATTGAAAACGCATCGACCAAAATCTTGAAAGTCGAAGAGAAGCTA TCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTGATA ATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGGAGTCTTT GCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGAAAAAAACCGCTCGAAGCAAGAGAAA GACATGGAAATATGCATTCGAGCGAAGAACAACACATGGGTCATCGCGCGTCTAAACAGAGGTA AAGAGCTTTACATGGCTTTAGAGAAAGCAAGTGAAACTCTTCTTGATGCTACAGACTCTGTCCA AAGATTCAGCAACAG
Genomic sequence	GTGTTTAATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTACTGAAAGCCTTC GTCTTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAGGAACTGGACAAGATCTTGTT CTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAGGGCTT ATCACGTTCACGAGGTTAGCTACTAGAGATTTTCCTTCTTTACACAGATTTTTCGAGTTCATGG ATTGATTGATGTTGTCTCATGTTCACATAAATTTTGAGCGTTATTAGCTTTTCCTGTATTGTTG GGTGTTCCTGAGACGTGGTTTATGGAATATAAACACAGACTTTTCTCCCCGGAGGCAGCTTGTG AGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGT CATGGTACAACATTATCAACTCTTTCACTTGTTTTAGCAATTGATTTGCACTTTGTTCATATGC ATAAAAAGAACAAAATTTGATTTAGACTTTGGTAGATTGTAGAGAAAAATAAGGAGATTGAAGC TGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGGAAGTGCACTCTCTCTTTGTTATGTTT CAAGGGTCAATTAGGGCATTGCTTGAGAAAGAACCAACTGGAGGACTTGTAAGATCGCACTTGT ATCCATTCATCACAGACTATTTAAATGGTAAGCAATAATCACCAAGTCTATAGCCCACAAAATC CCTGTGTAGTAGCACTTATCAAAAGTTTTTCTATTTTGGGGCAGATCTTTTCGTTGGGAAAAAA CAACAGTTACCTTCCTTCCGTGACACTTTGAAAGAGCGTGGAACAGTTCAGATGCTAACTTTAG CTAGAGATGCGGCACTTGAAGTTCAGGTTTGTTTCTCTATCAGAAGATGCGTTTCGAAACAAAA AAAAAGTTCACTATTTTGAATAGTATTATTTAGATGTACAGTCTCTCGTCGGAGTGCTAGATTC ATGTGCTGGGACCGTTCGATGCCACTCTGTGATTCTATTTCATGATCTACTGGTGTCAACAACT CTCTCACCTGTATGTTTTCAAATCCCTCATTCGCATTAATCATATTTGCCAAGATTGTTGAGTC GTTAAGATTCTTAAATTATCGTGGTCTGTGTAGACTATATTGTTCACTAATACTAAAAGCTTTA GTCTTTGTCTTCTCTCTCTCTTCTCTTTTCAGGATGATACCGTCGACTTGTTTGCATTTTCTGT CATGAGATTAACCACAAACGCGCTATCATCTGGCACAAGTTCCTGGTCATATCTACGCAAAGGA TCCGGTTCACCTCAAATATCTTCTAGATCTACTACGGTGCCCCCTCTTGGTTCAGGTGGTACAT TGCCTTCGGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCTTTGCAGCACGATAAGTGGTC GAAGGGGAAAGATGGGTTTCTTGTAACTGATATTTGGGGTTTAGATGCCACCCCGACAATTTTG ATACAGAAGACACAGGAAAGTTTTTACCTTTTGACTTATCAGTACAAGAGTCTCACCTTGGTTC TTCTCGTGCCTATCGCTGCAATTGTTAATGGAGAGCTAGACATCTCATTCGTGAAGCAGCAAGT TATTGAAAACGTTAGCTCATCTCTGTAAACCTGTCTTGCTTCATTGTAAAATCTTTTCAGACTC CATCCCTTATCATCTCTATGCATTTTTGCAGGCATCGACCAAAATCTTGAAAGTCGAAGAGAAG CTATCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTTACTAGTTG ATAATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACTAGCAAAGGTGAG AGAGAACTTCCATCAATCATATTCATATACTGCGATCTCGTGAGTAGCATAAGCAAGAGTGTAA CAAAATTGTCTCTGATTTCGTAGGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGA TACAGAAAAAAACCGCTCGAAGCAAGAGAAAGACATGGAAATATGCATTCGAGCGAAGAACAAC ACATGGGTCATCGCGCGTCTAAACAGAGGTAAAGAGCTTTACATGGCTTTAGAGAAAGCAAGTG AAACTCTTCTTGATGCTACAGACTCTGTCCAAAGATTCAGCAACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.224274802

Conservation Information
Conserved circRNAs	NA
PMCS	0.224274802

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT1G80910_circ_g.2

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