Detail information of AT2G42910_circ_g.2


General Information
CircRNA Name AT2G42910_circ_g.2
ID in PlantcircBase ath_circ_018042
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17857352-17857616  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G42910
Parent gene annotation Ribose-phosphate pyrophosphokinase 4
Parent gene strand +
Alternative splicing AT2G42910_circ_g.1 AT2G42910_circ_g.3
Support reads 1
Tissues whole_plant
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered AT2G42910.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATAATCTAAATTTGATTCCATTTGTTTGCAGGTCATAGTTGCATTTCCTGATGATGGAGCCTGG
AAGCGTTTCCATAAGCTGTTGGATCATTATCCCACGgttttactttgccgatcaggttcttcct
ttgtttgagactggaatcccgttgttgactaaacgccttcaacagcttcctgaaactgagaaag
ttagttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTACTTTGCCGATCAGGTTCTTCCTTTGTTTGAGACTGGAATCCCGTTGTTGACTAAACGC
CTTCAACAGCTTCCTGAAACTGAGAAAGTTAGTTCATGAAAAACTGTTACTGATAGCATCCACT
TGTGTTTTCAGTGGCTGTTCTTTTTTGTTTTTGCTCAATAATCTAAATTTGATTCCATTTGTTT
GCAGGTCATAGTTGCATTTCCTGATGATGGAGCCTGGAAGCGTTTCCATAAGCTGTTGGATCAT
TATCCCACG
Conservation Information
Conserved circRNAs NA
PMCS 0.227717199
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017