Detail information of POPTR_0005s08970_circ_g.1


General Information
CircRNA Name POPTR_0005s08970_circ_g.1
ID in PlantcircBase pop_circ_001523
Alias Chr05:6549084-6551869
Organism Populus trichocarpa
Position chr5: 6292234-6295019  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   e-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0005s08970
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered POPTR_0005s08970.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCATTGCACGCAACAAATGGCTCTCCATCCACTGTGATTTCAATCTCATCCCCACATATCTG
ACACACTTGCCCACTCAATTCTTTCACTGACTTAATctgaatcatgccaggatggtctcgtaca
ttgtttccaggccatggagttccatcttgcattgtccaaccatcttccggaaccttttgtgctg
tggaaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATCATGCCAGGATGGTCTCGTACATTGTTTCCAGGCCATGGAGTTCCATCTTGCATTGTC
CAACCATCTTCCGGAACCTTTTGTGCTGTGGAAACCAACCCATTTATCCTCACTTTGAATTCTT
CATATTCTCTCTGAACCAAAAATAGAACCAAATAGAATCATGAGCTAATATTGAGAAATAATCA
TCATGTCACTGAACAAAATTTTATGTAAGTTTTGAGAATGTACATCAATTTGGAATTCTAATCC
AGTAAAACTTAGATCAACATGGATCTTAATGAAGAGAAATCGCTAACCTTCATGGCACGCCTTT
CCCTGACAAATGCTGGATGAACTTTATTTTTCAAATAGTCAATCTTCTGAGAAAAATACCACTC
AGGGGCACGGGGCTCGATGTTAAATTTCTTGCAAAATGGAACCCACTTCCTAGCAAATTCAGAC
GTCTCGGAGAGAGCTTCAAATGTAAGCATGGCGGCACCATCGTCTGACACATAGCATGCAACTT
TATCCACAGGATAATCAACCGCGAGAATAGAGAGAACAGTGTTCGCAGTGATCAGCGGAGGTTC
TTTCATAGGATCAACTGTACTTACAAAAATGTCTACACTGGCTAACTCAGATGGTTTCCCTTCT
TTTTCATACCTGATAAATGAGCACAGCTATAAGCTATTGTAATTCATGCACACAACAAAAAAGA
AGTAAATGAAGAGGAAGAATGAAATGAAGCCTGATAATTTCAGGTAGCAAAGAACATATTACAC
AAGGAACTAAATGGATCGGCTCCACATACCTCAGTGATAGCCTATCAAGGTATGTTTCCCGTTC
TATAGGGTACCATTTTGGAAACTGGTCTAGAATCCATGATACTCCGAACCATATTTCACATATT
ACTGATGTCAGCCACAAACCATATGCGTCATTGACTGGGTGGAGAATTCTATAGTGAAAAAAGA
TGCCAAGAATCACAAGACGTAGGATGATTATCATTCTGTATGGGTTTATCTTGCTTGAGGGAAT
TGGTAACTTCCTTGAAAGTGGCTGCCTGCCCTCATCCATCCTGACAAAGTACATCAAGAAAGCT
TGTAAGTAACCCAAATAAATGAATGGATAAACCAACAAAAATAAACAGAGAAAAAAACCAATAC
ACTAAACAATTTTGAATAAAACTCTAATAATTTTGTCTAATTAAGATTTTACAACCTTATTGAT
CAACAGATTACTGATTCCAACAAGAGTATTACATAGGAAAATGTAACATTCAAAAGATGAATCC
ATCTCTGAAAGGTTAGGTTCACAACAAAAGAAAATATAAGGTTGTTTAAGTAGTAAATGTCAGC
ATTCAAGAGTGTAGATTAAAGTTGACCCTAACATGAAACCAAACTGTTTTCTTTCCTGCCTCAG
TGTCACCCCAAACCCCAAGTGGATAGACGGTCACAAACAATTATGTGATCCACCATATTGTCTC
AAGGCTTATGCAAAGCAGTGGTTATTGTGAGTTTTCCAAAAGGCAACAATGTCGAACAAGGCAT
TTCAGATATTAAGTGATTTCTTTCCAGAAACCCTTACAAATATTTAAGATTTCTAAAACTTTGT
CTTTGCATGTTGTCACACCAAACATCTGCCGTAACAGATTCAAGTATATGTAATGCAAGAATGG
TATAAAGAAAAGTTTGCAGGAGAACTTCGCCTTTGCATGTTGTCACACCAAACACCTGCCACCA
CAGATTCAAGTATATGTAATGCAAGAATGGTATAAAGTAAAGTTTGCAGGAGTCACTCACATGG
GCAAATCAGGATCATCCAGTTCATCCCCTTCAAAGTTTCCACCATCATATCCTCCTTCATGCTT
AACAACCTGAAGTTTGTCATTCTGTCTTTTCTTCCAGTCCTCCATTCTGTCCTTCCATGCCACA
CTCCCATACCCGTACACTGCAATGTCTTTCTTTGGAACCATTGGTCTTGGTTGAGCTACAACAT
TGGAAGCATTCAGTTAGCTGATAACAGGATCAATTGAACAATCAACAGAAGGATATGCAAGTAG
AGGCCCAGGCTTACAAGGTATAGATGGATCAGAAAATGAAGTTGGATGAACTCTATTTCCATGA
CTCATGTGTGGTGGTACAATAAGTGCATGTCGGTCAGAAGAAATCTCGGCATCCTAAACAAAGG
AAGAGGAAAACAAATAAAAAGCATTGCTTAACCCACTTTTGCTGGTTTTCATTTAATGTGCACA
TATCAATGACATACTGAATTACCTCCTCGCCATAAGTTAAAAGAGGAATTTTAGAGCTGAGGGG
AGATGAATCAAGTTCCCCTTGTGTGGGAATTCCATATGTATTAGAGTGAGAAGCACGGCCAGTG
TTTATGCGTGAAGAGAGCATTGCCTCTGCAACTTGTTCTGGGCTTAAACCATCAAGGTTTCCAT
AATCAAACTCGTGTTCCAAATCATCTGTATCATCTTCTTCCTCGTCACCCTCAACCCTTGGACT
ACCTGCAACATGGTTGATCGTTATTGATACTCCAAATGATGAATGGAATCTCAATAAACCACAG
ACACACAAAAATAGTTCAGGAAACCCTAACCTTTGAGGCGCTTGTATCTGGTCTTGCATTGAGG
GCAAGCTTGATTTCCCTCTCTTCTCTCATATTCATAGCAGGGGCGACACACAGGGAAAGCACAT
TCATTGCACGCAACAAATGGCTCTCCATCCACTGTGATTTCAATCTCATCCCCACATATCTGAC
ACACTTGCCCACTCAATTCTTTCACTGACTTAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.164069688
Functional Information
Coding potential Y
Potential coding position 6294623-6292236(-)
Potential amino acid sequence MLSSRINTGRASHSNTYGIPTQGELDSSPLSSKIPLLTYGEEDAEISSDRHALIVPPHMSHGNR
VHPTSFSDPSIPSQPRPMVPKKDIAVYGYGSVAWKDRMEDWKKRQNDKLQVVKHEGGYDGGNFE
GDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGIFFHYRILHPVNDAYGLWL
TSVICEIWFGVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPL
ITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYF
SQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVSTAQKVPEDGWTMQDGTPWPGNNVRDH
PGMIQIKSVKELSGQVCQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT
RYKRLKGSPRVEGDEEEDDTDDLEHEFDYGNLDGLSPEQVAEAMLSSRINTGRASHSNTYGIPT
QGELDSSPLSSKIPLLTYGEEDAEISSDRHALIVPPHMSHGNRVHPTSFSDPSIPSQPRPMVPK
KDIAVYGYGSVAWKDRMEDWKKRQNDKLQVVKHEGGYDGGNFEGDELDDPDLPMMDEGRQPLSR
KLPIPSSKINPYRMIIILRLVILGIFFHYRILHPVNDAYGLWLTSVICEIWFGVSWILDQFPKW
YPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVAC
YVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLKNKVHPAFVRERRA
MKREYEEFKVRINGLVSTAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQIKSVKELSGQVCQICG
DEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDTD
DLEHEFDYGNLDGLSPEQVAEAMLSSRINTGRASHSNTYGIPTQGELDSSPLSSKIPLLTYGEE
DAEISSDRHALIVPPHMSHGNRVHPTSFSDPSIPSQPRPMVPKKDIAVYGYGSVAWKDRMEDWK
KRQNDKLQVVKHEGGYDGGNFEGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLV
ILGIFFHYRILHPVNDAYGLWLTSVICEIWFGVSWILDQFPKWYPIERETYLDRLSLRYEKEGK
PSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEF
ARKWVPFCKKFNIEPRAPEWYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVSTAQK
VPEDGWTMQDGTPWPGNNVRDHPGMIQIKSVKELSGQVCQICGDEIEITVDGEPFVACNECAFP
VCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDTDDLEHEFDYGNLDGLSPEQVAE
AMLSSRINTGRASHSNTYGIPTQGELDSSPLSSKIPLLTYGEEDAEISSDRHALIVPPHMSHGN
RVHPTSFSDPSIPSQPRPMVPKKDIAVYGYGSVAWKDRMEDWKKRQNDKLQVVKHEGGYDGGNF
EGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGIFFHYRILHPVNDAYGLW
LTSVICEIWFGVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPP
LITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWY
FSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVSTAQKVPEDGWTMQDGTPWPGNNVRD
HPGMIQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021