Detail information of Os03g0432900_circ_igg.1


General Information
CircRNA Name Os03g0432900_circ_igg.1
ID in PlantcircBase osa_circ_020423
Alias Os_ciR2948
Organism Oryza sativa
Position chr3: 18209733-18214705  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000017252_circ_ig.1 EPlOSAG00000017252_circ_ig.2 Os03g0432900_circ_igg.3 EPlOSAG00000017252_circ_ig.4 EPlOSAG00000017252_circ_ig.5 Os03g0432900_circ_g.1
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTATCACTTTCTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAAGGATAAGAA
AGGTCAAGAAAAAGGTGACCAGAGGAATCTTGATAGcttaattcagcagttacagaaatttcta
atggacatgcgtaaccccaatgattcaagacgtgtaagactgtttcttttacgtaagaaattca
tgattcag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAATTCAGCAGTTACAGAAATTTCTAATGGACATGCGTAACCCCAATGATTCAAGACGTGTA
AGACTGTTTCTTTTACGTAAGAAATTCATGATTCAGTTCAAAGAATAAAAAGAACAAGTGATTA
TCTAAGTACCTACCTTGGTTCATTCTGATTCTGCTAGATTTTATATCTGCATTTACTTCTGTTT
GTGTTTGGTAACTGTGATGGCATGGGTTGGGTATGGGTCTTAGAACCCTGTTTAGGGCATGTAC
CCTTGATCAGCTAGCCAATCACTGATGTGCCCCATGGTTTCTGCCAAAGCTTTACCCCTAAGGG
CATGTATAGTAAGGTGATGCAGCTGTCTGTACTGTTTGACACACAAGATTTTGGGGGATGTGGA
GAAAAGAGGAGAGAGAACAAGGTTTTGGGGGATTTTGGGTTAACGGTGTTTCCTCGGATGATTT
TGCCCTTGCTTGGTTTATTACCAATCCAACTCCCCTAAGAGAGGGAGGGAGGTAGCACAAGGAC
CTTGGCACACGGCTTTGCCAGCAGATGTGTGCTCCCGGTCAACCCCATCATCTGTGTGCATCAC
TTGACCTTTGGCCCAGCTGGCTGGTAGCTCAGTCATTATCACTCGCGTTCATGCCTCCCATTGG
CCGCAAGCTGCCCCTGTTATGTGTGCATTGCCCCAGTTAAGAGAATGGGAAAAGAGAAAAACAT
AAACACCAGAGGGGAACAAGACATTCAAATCATGCAATCTTATCTTATCTGCTAACTTAACTAA
GTAAGTGCGGGAAACATTCAACTAAAGACTATGGATGCCATGTAACTGGCGAAACTCAATTCAT
GACTGAACTCTTAACTAATAAAACAGAGACTTAATTGCCAAACTGCTGCTGTCTCTTGTTCCAC
TTGGAGGCTGCAGTTCTGGAGTATGCTTGTGCCTAACTCTTTCCACTGCCTTGCCATGTGGCTT
CTGCCTTTAGGCCCCAAAGTCCAGACCATACTAGAGTATGTGATGCACAGACTGATCCTAGCAG
AAAAATACCTATCTGCATGGAATGTGTGTGGGTTTCTTGTCATTGTAGTTGAGCGAAGGAATTA
AAAATCTTTCTGTTCTTTTATTACAAATCATGTGTATGGCTTTTAATTTTGAAGTACATTTTTC
AGAGAGACCAGCCAAATTAAGTCATTTAAAACAAGTGAGTGAATAAAATATGCGGGGCCTGCTA
TTTATTTCTTTATGATTAGTTAGAGGTCTGTGTATTGTTGTGTTCTGCCATAAAAAATGTATTC
TCATTGTGGCTATAAGACATGATTTAGATTACTTAGGGATTGACAAAAAATAAGAATATGTGTT
TTTTTTATTGAAAAGAATGTAGTTTGTTGGCGTAGATTTGTCTCCAATTTTCTCCAGTTATTTA
ATGGTTACAAAATGTTTAAACTTTAGGTTGATTTAAACTTTCTGATTGTTACATTATTTTTATT
AGATACATGAACTGGCTTGTTAGTTAATTTTAGAATGAAAAACCAGTATTAAAAGCGAGAAATT
AAGATTTATTCCAAATTTTGATTCTGCTTGTACTTGTTGCTTAGTACTAATTCTTCATTCTTTC
CATGCTCTTGTATCACTAACACAAGTTCCTTTCACACAGATGGGATTTGACTTCGCAGTGAAAG
CTGTTTACACTGGTATTTGGATTGCTGCTATATCTCTCTTTATGGAGTTGCTGGGTTTCAATAC
CCAAAAGTGGATTACTGCTGGAGGTTTTGGGACTGTGTTGCTTACACTTGCTGGTCGTGAGGTA
CTATGAAACCTTCTATGGTAGTGAAGTATTATTTTTTGTGGCATAGCAGTAATAGGTATTATAA
ACATGTAGATCTTTACAAACTTCCTCTCAAGTGTTATGATCAATGCCACACGTCCATTCGTGGT
GAATGAATGGATCAATACAAAGATAGATGGTGTTGAAGTCTCTGGTATTGTTGAGGTTAGTACT
TTGCATGCTTTGTTTACATTCTCTTCATTTATCTGGCACAAATGCATTATGCTGTTTGGTTTGC
TCCATCTTATGGGCTACATCACTACGTAAATGGCATCTTTCCTCCATAATTTGGAATTTCATTT
GGATGTACTGTTACCCCTGCATATGATTTTGTTGAATTCTCATTTTTATCCTGAAACTTGCATT
AACTATTTTGATTTTCAGCATGTTGGCTGGTGGTCCCCTACAATCATTAGAGGTGATGATAGAG
AAGCTATATACATTCCTAACCATAAGTTCACAGTTTCTATTTTGAGAAATAACACTCAGAGGAC
CCATTGGCGTATTAAGACCTACCTGGCTTTAAGCCACATGGATGCTGCGAAAATTGGTGTAAGC
ACCATTTTAAATTAATTACTTACGTTCACGTCTTAATCCTTTCCCCATAGTATTGAATCCTTAT
TATTGTTTCTTTCCATGTTCCATTGTAGATAATTGTTGCGGACATGAGAAAAGTGTTGGCAAAG
AATCCACATATAGAGCAACAGAGGCTGCATAGGAGAGTATTTTTTGAGAAAATTGATCCAAAAA
CCCAAGCTCTTATGGTAAATTCTAATTTCTTACATTGAGTAATTCCCTCTTTTGATCTGAATAC
TAGTGGAGTTGGTCCTTACCAATGGTCAGTATGGCATGTTTTGGTAGCTAGAACCTTCCAGATC
TGCCTTATCCAGAGCCTACTTTTTTTTTTCTTTTGGGTATGGTTTACTGTGTTCTTTATGTGCT
GTTGAGCTTGATTCTTGTATCCTGCCAGTAGCTGGTATGTCGTAAGGTGATAATGTCAGTAAAT
TTTGGGACAGCTGTCAAGTAGTAACTAGGGGCATCAAGGGGACCAGGTAGGTTTGGCTCTAGCT
CAGTACATGCTCAAGCTAGCTAGACTGTTGGGGGTTTGAGCGTGGAGCTTGGCTTGATAACAAT
ACAAATATTTTGGACTTCCAACTCAAGTTTATTCGACCTGTAAGTCACTTGTACATGTGTATTC
AAAAAGTTTGCCGACACAGTTTTAGCTTAAGTGCGGAAGGGCTTCAGCTTTCCCTGCAAGGCAG
TTTGGGCAGACCTTGTATAGCTTGTCGAACCTGAGCCATTTTTAATCAACCTCACTAAGAACTA
ACCAATGCACTGTGATTATGACTGATTTTTGTTTTGTTTACCTCTTCTCTAAATTTTTTAAACA
ATTATTTATATGCAAAAGAAATCTAGAATGCAGCTGAAATCATTTTACATCACTAAAATCTTGG
CACATAAATCTGTTTGCTCTTAAGATCGTAAGTTGCCAGTTTTACAAAAGTCTTTCTGTCAAAA
CCAGTTACTGGTTGGTAGTTGATTTTCCTATCACCATCAGGATGTCATTTGTTCTCTTTTTTAC
TTTTCTGTTCAAAATAACTGCCATTCCATTTTCACCTTCTGAGTTCAAACTGGTGTTAAGATTT
CAGTTTCATTGCCCTTGTATCAATTTATCTCTGGTCCCAAGCTCGCAAGTGTCTAAACTTTTAT
ATCATTTTGTTTTGTTTTCCTGTAGATTTACATATCATGCTTTGTGAAGACATCTCATTTTGAG
GAGTATCTCAATGTCCAGGTAATGTGTCTGTATCTGCATATCTGCTTACAATAAAGACACGTTT
GGTATGTGCTGAAACGATATGCTCTATCAAGAATACTACTTTCTAGGCTGTATTATTAATAATA
TTTGCCCAAGCTAGGTAGGACCAGTTTTATTGGAATTATTATGGTTATTTGACCCTTTAGTGTA
ACTTTGTCAGAACTGACAGTCACCAATGCATGAAGCATAGTCTCCATTATAGTTCTTTTTTGCA
TGGTTGCCATCTGACAGCAATAAATGAAATGGGCATAAAGAGTGTGGCCACACTAATTGGAGCA
AATAGCATATTGTCATATCTTAGTATTTGACACTTCAGCCTGGAATTATAAATAGACGCAAGAG
ATTGCATGAACTCCATACATGCCATTGATGATGACTCTAAAGGGCCAATGAACTCCCGATCTAC
TCACTGTCAACCTGGTGCATTCATCTTTTCTGGGACTTTTCCTTCCACAGTTCCACCTTGTATG
GAAAGCATTATAATAGCTTTTATTTCAAATTTCATTGGAGAAACCTAGCCTAGAAAGCCATGTT
TGCATGCGATATTCCAGTAGGATTTTTAGACAGCACTTGAAACAATTGATGGTAGTGTTCTGTC
TGTGGTGCTACAAAACAACTGAGTATTTTTTGTTCAATATTACAACAGGAAGCTGTTATGTTGG
ATCTTCTTAGAATAGTCGGCCATCATAGGGCAAGGCTTGCCACCCAGATTCGAACAGTTCAGAA
ATCTTATGGCAATGCAGACATCGATAACATTCCTTTCGGAGAGGAGATGTATAGTCGTGTACGT
GGCCGTCCACTTCTGATTGATACCTCTGCAAGGATTAGCGATGACAAGTCTAAGCCTCGTCCAG
CATCGCGTGAAGATCATAAAGTCAAGACAGTCACTTCTGCAGAGGCTAAGTCAGCTTCAGCTGA
TAATGCTAGTATAAGCAACTCCGAGAAGCAGGAACAGAAAAAATCAGTACCAGAAGATGGTCGC
ATGAAGAATAGTAAAAATGATCATGCGACAACAACATCGCCATCTTCTCCATGGTCAGAAAATA
TGGATCCTATTGCATCAACTTCCAAAACTGGTAAAGGAAAAACTCAAGGAGCTGAGGCCACAGA
ACGAGAAGGAGATGGCGCTGTCTCTGTTGCTAATTCAAAGAAAGAATCGAGACCCGTCTTTGAA
GACAACATTGTTCTGGGTTTAGCTCTTGAGGGATCCAAGAGGACATTACCAATTGATGACGGAA
TGAACCCTCATCTATCACTTTCTGAAACTGAGCAAGACACAGTTGAGGCTGCTTCATCACCGAA
GGATAAGAAAGGTCAAGAAAAAGGTGACCAGAGGAATCTTGATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.593982252
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015