Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037946_circ_g.1 |
ID in PlantcircBase | zma_circ_009076 |
Alias | zma_circ_0002348 |
Organism | Zea mays |
Position | chr6: 143063634-143064600 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d037946 |
Parent gene annotation |
phospholipase D13 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d037946_T001:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.260739943 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
143063674-143064597(+) 143063689-143064555(-) 143063959-143064276(-) |
Potential amino acid sequence |
MPVVHDEDEADDVNVPPQSDDNSIRNRNVPSSAVLPVIRPALGRQNSISDRAKVAMQEYLNHFL GNLDIVNSREVCKFLEVSCLSFLPEYGPKLKEDNVSVGHLPKIQKDRKKRCCSCGLFNCCKSNW QKTWAVLKPGFLALLEDPFDPKLLDVIIFDALPHMDITGEGQVSLAKEIKERNPLHFGFQVKEW LQNLGIGEHMPVVHDEDEADDVNVPPQSDDNSIRNRNVPSSAVLPVIRPALGRQNSISDRAKVA MQEYLNHFLGNLDIVNSREVCKFLEVSCLSFLPEYGPKLKEDNVSVGHLPKIQKDRKKRCCSCG LFNCCKSNWQKTWAVLKPGFLALLEDPFDPKLLDVIIFDALPHMDITGEGQVSLAKEIKERNPL HFGFQVKEWLQNLGIGEHMPVVHDEDEADDVNVPPQSDDNSIRNRNVPSSAVLPVIRPALGRQN SISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSCLSFLPEYGPKLKEDNVSVGHLPKIQKD RKKRCCSCGLFNCCKSNWQKTWAVLKPGFLALLEDPFDPKLLDVIIFDALPHMDITGEGQVSLA KEIKERNPLHFGFQVKEWLQNLGIGEHMPVVHDEDEADDVNVPPQSDDNSIRNRNVPSSAVLPV IRPALGRQNSISDRAKVAMQEYLNHFLGNLDIVNSREVCKFLEVSCLSFLPEYGPKLKEDNVSV GHLPKIQKDRKKRCCSCGLFNCCKSNWQKTWAVLKPGFLALLEDPFDPKLLDVIIFDALPHMDI TGEGQVSLAKEIKERNPLHFGFQ(+) MYYWHMLPNSQILEPFFDLESKMQWITFFNLFC*(-) MTGKTALEGTFLFLIELSSDCGGTFTSSASSSSCTTGICSPIPKFWSHSLTWNPKCSGLRSLIS FAKETWPSPVISICGNASKIMTSKSFGSKGSSSKAKNPGFRTAQVFCQLLLQQLNNPHEQHRFF RSF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |