Detail information of BGIOSGA033130_circ_g.4


General Information
CircRNA Name BGIOSGA033130_circ_g.4
ID in PlantcircBase osi_circ_008515
Alias Chr10:19996774_19997138(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 16583799-16584163  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA033130
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-TA
Number of exons covered BGIOSGA033130-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGGTCAAGCTGTGTTTTTGGATGCTAAGGAAACATCAGTTTTGGTGAGCTTTTGCCTGAAA
CTACTCCAAATATACTCCTCTCATAATATTGGAAAGggtctgttgtctattggaacgactaaga
ggagctgctagagctacccagcctcgcactcaaaaggttctatttgagatgggtcacactgtga
tgaactcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCTGTTGTCTATTGGAACGACTAAGAGGAGCTGCTAGAGCTACCCAGCCTCGCACTCAAAAG
GTTCTATTTGAGATGGGTCACACTGTGATGAACTCGCTGTTGACTCTTCTGGAGGTGTACAAAA
ATCAGGCAAGTGACCCATTTTTTTGTCAACTATTCTATGATGCGTGTACAAGTGAACTTTGAAA
GATCATGCAATAATGTTCATTTTCTTCAGTCTGCAGTCATATACATGATACTCAAGTTCGTCGT
TGATTTTGTTGATGGTCAAGCTGTGTTTTTGGATGCTAAGGAAACATCAGTTTTGGTGAGCTTT
TGCCTGAAACTACTCCAAATATACTCCTCTCATAATATTGGAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021