Detail information of BGIOSGA011916_circ_ig.1


General Information
CircRNA Name BGIOSGA011916_circ_ig.1
ID in PlantcircBase osi_circ_013794
Alias Chr03:3358895_3359334(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 3820106-3820545  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTATTTTGTAGCAGAAGGGGTTGACCAGGACTGCTCTGTCAAAGAGCAGAATGTCCTTAACA
TCAGCACTGCCTGCTTGCAAATTATATGCTTACATGgttagtggagacaatggggatatccagg
caaggaatctgaagagtatgtaacttctactcacgcgcatcaaaatttcagtatctcatctttt
actgcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTAGTGGAGACAATGGGGATATCCAGGCAAGGAATCTGAAGAGTATGTAACTTCTACTCACGC
GCATCAAAATTTCAGTATCTCATCTTTTACTGCCTGCTTATCTGGTGAGATATTATAAGAGGGA
GGACTCAGTAAACTCCTCTAAAAAATGGTTCGAAGTAAACCATTTCAATTATTCAGCTCAGTAC
GCAAAACAATGAGGCTGGCTTTAGGTATGTATCCTTCCTCCCTGCTTCCACTGTAACAGTTCAT
TAGTCTAAGTGAAATTATTTAGCAATTAGGTCCTAGGTAACTAGCTGAGTAGACTAATAAACTA
GGCTCTAAAAATCTTCTGGATCTTATTTTGTAGCAGAAGGGGTTGACCAGGACTGCTCTGTCAA
AGAGCAGAATGTCCTTAACATCAGCACTGCCTGCTTGCAAATTATATGCTTACATG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021