Detail information of AT2G42840_circ_g.1


General Information
CircRNA Name AT2G42840_circ_g.1
ID in PlantcircBase ath_circ_018024
Alias NA
Organism Arabidpsis thaliana
Position chr2: 17826793-17827011  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene AT2G42840
Parent gene annotation Protodermal factor 1
Parent gene strand -
Alternative splicing AT2G42840_circ_g.2 AT2G42840_circ_g.3
Support reads 2
Tissues siliques and seeds
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G42840.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCTTGGTGGAGGAGATGAGTAATATCCACCAGAAGGAGGGTGTGATGGCGTTGGGTGCGAAG
GAGTGGAAGGGTGTGAAGGCGTGGAAGGGTGGGAAGgagcaggaatgaaaggagttccaggagt
gcctgggtcaatgataggagttggtgggcttcctccaatgatgggtgtgcctggatcaacaatg
ggtgatgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCAGGAATGAAAGGAGTTCCAGGAGTGCCTGGGTCAATGATAGGAGTTGGTGGGCTTCCTCC
AATGATGGGTGTGCCTGGATCAACAATGGGTGATGGTGGAGTCACAACAACCGGAGTTCTTGGT
GGAGGAGATGAGTAATATCCACCAGAAGGAGGGTGTGATGGCGTTGGGTGCGAAGGAGTGGAAG
GGTGTGAAGGCGTGGAAGGGTGGGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.146496195
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015