Detail information of BGIOSGA032758_circ_g.1


General Information
CircRNA Name BGIOSGA032758_circ_g.1
ID in PlantcircBase osi_circ_008874
Alias Chr10:12806966_12807916(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9122155-9123098  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032758
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA032758-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTCGTAGCTGAAGCTTTGACTGTGAAATTTGCAGAAAGTTGACCTGAGCAAGCTGGAAATG
ACTGCATTATGGAGATATTGGCGTCACTTCAATCTCggtgcttaccaatggcatagaggtaaag
ctgcaaaggaatgctttaagtgtgattgaacctccaactggcaatgaggatgatgataagtttg
actgtgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGCTTACCAATGGCATAGAGGTAAAGCTGCAAAGGAATGCTTTAAGTGTGATTGAACCTCCA
ACTGGCAATGAGGATGATGATAAGTTTGACTGTGAGAACATGCAGTGGAATAGTTCAGATCTGG
GTAAGATCATATTCATCCCACACAGATGTTCTTGCTTCATCAGCAATGTTCCCCATGAACTTCA
TACTAAATGCTGATCTTCTCAATGCTTTCGTATTTTGTTCGCATGATAAAATTCTGCCGATCTA
TGAATAATAATGTCGTATACTTTGTTCTATCTTGTGGGGAAGGACCAAAAAAGACAGTTTACCT
GATGCACGACACCATAATTTTCTGTAAAGAGCAATTAGCCCCTAGAATTAGCCCGAACGCCGTC
TGTGTCACGGACCAATTTAGCTTGTGAAAACCGAACTTAAAATAATGGCACGGTTTTCGTGGCA
CCTAATTATGTCCTTGATTTGGTTGCATGCGTCTCGTTTGTAAATAGTTGGTCTTGTTTAATCC
CATTCTTGCAGCATCCGATGACGCACAATCACCAAAGCCACAGAGGTCAAGGAGCAGGCAGCAT
AGAGGGTTCCAGACCAAATCCTTCAGCCGCTCCATGTCTTGTGATTCCCACTCCAAGGCGTCAT
TTTCTTCCTCCTCAAGGGCTCACACGGTGCGACTTTTGCTTCCTTGGTTTCTGTGCTTGTAACA
ACCATTGCTTGTAGCACCCCAATCACTTTCCAGTAATATGTGTCAGTGTCACTGTAACTTTGCT
CTGTCACAACCTTTGTAGTATTTGGACTAAATCCCTACTGTTAGCTGTAACATTATGTGTTCTC
CATGATGATGTGGTGGTCGTAGCTGAAGCTTTGACTGTGAAATTTGCAGAAAGTTGACCTGAGC
AAGCTGGAAATGACTGCATTATGGAGATATTGGCGTCACTTCAATCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021