Detail information of BGIOSGA024841_circ_igg.1


General Information
CircRNA Name BGIOSGA024841_circ_igg.1
ID in PlantcircBase osi_circ_017257
Alias Chr07:2089160_2089391(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 2135924-2136155  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA024841_circ_igg.2 BGIOSGA024841_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGCTGAGATAGAGATTTCGACGATCATGCGACGCTGAAGGAGCTGGCTGCGCTCTCGACGAA
CTTCCTGGCGCCCTTGAACCACCTCTTGTCGCCGGCcctctctccttaacttgttcttaattct
catgtacaatcaaagaaacacacacgcacacacacatgcgtgcactgcatctctctgagcaacg
aactcgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCTCTCCTTAACTTGTTCTTAATTCTCATGTACAATCAAAGAAACACACACGCACACACACA
TGCGTGCACTGCATCTCTCTGAGCAACGAACTCGATTGATTTGATTTTGATTCGCTAGGGATTA
AAGAGAAGCTGAGATAGAGATTTCGACGATCATGCGACGCTGAAGGAGCTGGCTGCGCTCTCGA
CGAACTTCCTGGCGCCCTTGAACCACCTCTTGTCGCCGGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021