Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G24740_circ_g.2 |
ID in PlantcircBase | ath_circ_040274 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 8472280-8473201 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT5G24740 |
Parent gene annotation |
Protein of unknown function (DUF1162) |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 6 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G24740.4:3 AT5G24740.1:3 AT5G24740.5:3 AT5G24740.2:3 AT5G24740.6:3 AT5G24740.3:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.173625866 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8473025-8472282(-) |
Potential amino acid sequence |
MKNNKAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGLELELQTLLSL LEFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTPHARNIPVFNKNQRSIVALPIVVP IGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSAPWMLRNGILTSGESLIHELVYACASNV VLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVILSFNHDHEVIPPDWGMKNNKAILLSEIVQQ VRGNSCDAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGLELELQTLLSLLEFVKAVLPNSQARL LPLSDPTLRPLIYDTGSKDISSEDTPHARNIPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRR RKIYVETFDLAPIQFTLSFCSAPWMLRNGILTSGESLIHELVYACASNVVLELSQSVDQQKLSF QISSLQIDNPLQNSSYPVILSFNHDHEVIPPDWGMKNNKAILLSEIVQQVRGNSCDAVVYVDLA KWRKKDVSLVSFEYINIRIGEFGLELELQTLLSLLEFVKAVLPNSQARLLPLSDPTLRPLIYDT GSKDISSEDTPHARNIPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQF TLSFCSAPWMLRNGILTSGESLIHELVYACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSS YPVILSFNHDHEVIPPDWGMKNNKAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYI NIRIGEFGLELELQTLLSLLEFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTPHARN IPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSAPWMLRNGI LTSGESLIH(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |